GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003606-TA|BGIBMGA003606-PA|IPR000086|NUDIX hydrolase
         (352 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       26   0.56 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.0  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 25.8 bits (54), Expect = 0.56
 Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 3/108 (2%)

Query: 236 YELTRFSHVKDLDELIEFAKSNSCYGHELVFPVYVKVADGILQILPGDDLYPSDVXXXXX 295
           YE+ R      L E++E    +   G  LVF    K AD I   L  ++ YP+       
Sbjct: 427 YEVARNKKKDLLKEILERENDSGTLGGTLVFVEMKKKADFIAVFL-SENNYPTTSIHGDR 485

Query: 296 XXKYIDKTILELRENCKTI--HRAEYPKSKDIKPVFVIRNYKPYNHID 341
             +  ++ + + +    +I    A   +  DIK V  + NY     ID
Sbjct: 486 LQRQREEALADFKSGRMSILVATAVAARGLDIKNVSHVINYDLPKGID 533


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 10/18 (55%), Positives = 11/18 (61%)

Query: 218 DPTEILNSSDVKLYPPQT 235
           D    LN SD+ LYP QT
Sbjct: 782 DVKTTLNISDIALYPSQT 799


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.137    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,355
Number of Sequences: 429
Number of extensions: 5216
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 2
length of query: 352
length of database: 140,377
effective HSP length: 58
effective length of query: 294
effective length of database: 115,495
effective search space: 33955530
effective search space used: 33955530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)