GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003602-TA|BGIBMGA003602-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif), IPR000061|SWAP/Surp,
IPR006569|Regulation of nuclear pre-mRNA protein
         (763 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   2.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   7.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   9.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   9.3  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 53   AGARRED-TSEKGKLYKPVSRLDEKRGGNDSDMLRNLTLKQESGKPRSKQKGQDKKK 108
            AG+R ED T +  KL +     +   GG   D  R  TL     +P+ +Q+ Q +++
Sbjct: 1406 AGSRDEDSTRDSTKLDRSSREREVHNGGQQEDRDRK-TLTSAPQQPQQQQQQQQQQQ 1461


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 194  MWPRSDEEKARGRNCGFVAFMSRKD 218
            +WP   EEK+R  +   V F+S  D
Sbjct: 1022 IWPMKGEEKSRLFHYSVVPFVSNHD 1046


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)

Query: 261 DPDDKELYDKILS--QSIVKVVVPT 283
           +PD K LYD +LS    +V+ VV T
Sbjct: 26  NPDAKRLYDDLLSNYNKLVRPVVNT 50


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)

Query: 261 DPDDKELYDKILS--QSIVKVVVPT 283
           +PD K LYD +LS    +V+ VV T
Sbjct: 26  NPDAKRLYDDLLSNYNKLVRPVVNT 50


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.133    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,582
Number of Sequences: 429
Number of extensions: 8064
Number of successful extensions: 38
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 36
Number of HSP's gapped (non-prelim): 4
length of query: 763
length of database: 140,377
effective HSP length: 63
effective length of query: 700
effective length of database: 113,350
effective search space: 79345000
effective search space used: 79345000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)