GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003601-TA|BGIBMGA003601-PA|IPR000698|Arrestin,
IPR011021|Arrestin, N-terminal, IPR011022|Arrestin, C-terminal
         (441 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.96 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.9  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   5.1  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   8.9  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 0.96
 Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 7/98 (7%)

Query: 344 DKWGLALDGQLKHEDTNLASSTLIADPAQR--ENLGIIVQYKVKVKLCLGPLGGELSAEL 401
           DK    LDG+L H+D    S    +  + R  E+   +    +   +    L G     L
Sbjct: 425 DKCYFCLDGKLPHDDQPPLSPQSDSSSSSRSAESPMSVQVDPMAASVVAAALTGTYPTLL 484

Query: 402 PFILMHPKPEEEPRAPDQPH---ATPDHDLIQLDPPPK 436
           P   + P+  E P    QPH   ATP    + L   PK
Sbjct: 485 PQWCLPPR--EAPLVGVQPHQDSATPADQPLDLSAKPK 520


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 3.9
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 35  CDNHEDTDEQRWWNRGGRMDDAGSNKQRQATRVFKKSSPNGKI 77
           C+ H DT     W +GG+++   S   R    V ++ +P+G I
Sbjct: 829 CEVHGDTPVTVTWLKGGKIELNPSTNYR--VTVKREVTPDGVI 869


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 3.9
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 35  CDNHEDTDEQRWWNRGGRMDDAGSNKQRQATRVFKKSSPNGKI 77
           C+ H DT     W +GG+++   S   R    V ++ +P+G I
Sbjct: 825 CEVHGDTPVTVTWLKGGKIELNPSTNYR--VTVKREVTPDGVI 865


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 94  DPIDGVVLIDPEYVKDRKVFGHVLAAFRYGREDLDVLG 131
           D I G+ L   +   DR +F H +++FR       +LG
Sbjct: 373 DGIFGMALSPVDIHDDRTLFFHPMSSFREFAVSTSILG 410


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 8.9
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 103 DPEYVKDRKVFGHVLAAFRYG 123
           D EY   RK    +  A+RYG
Sbjct: 204 DKEYRARRKFIAEIAFAYRYG 224


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.136    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,290
Number of Sequences: 429
Number of extensions: 5891
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 5
length of query: 441
length of database: 140,377
effective HSP length: 60
effective length of query: 381
effective length of database: 114,637
effective search space: 43676697
effective search space used: 43676697
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)