GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003597-TA|BGIBMGA003597-PA|IPR001806|Ras GTPase,
IPR003577|Ras small GTPase, Ras type, IPR003579|Ras small GTPase, Rab
type, IPR003578|Ras small GTPase, Rho type, IPR002041|GTP-binding
nuclear protein Ran, IPR013753|Ras, IPR005225|Small GTP-binding
protein domain
         (182 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   4.1  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   5.4  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 6/23 (26%), Positives = 13/23 (56%)

Query: 97  NANSFHQTSKWIDDVRTERGSDV 119
           N N +     W+D V+ ++G+ +
Sbjct: 141 NTNKYKDYYIWVDPVKDDKGNPI 163


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 7/22 (31%), Positives = 14/22 (63%)

Query: 87  TVAVVVYDITNANSFHQTSKWI 108
           +++  V+D+ N + FH  S +I
Sbjct: 168 SISGTVFDLINIHLFHDASNFI 189


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.132    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,373
Number of Sequences: 429
Number of extensions: 1681
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 182
length of database: 140,377
effective HSP length: 54
effective length of query: 128
effective length of database: 117,211
effective search space: 15003008
effective search space used: 15003008
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 41 (20.6 bits)