GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003594-TA|BGIBMGA003594-PA|IPR001752|Kinesin, motor
region, IPR001680|WD-40 repeat, IPR011046|WD40-like
         (1367 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    27   1.0  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    25   4.2  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      25   4.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    25   5.6  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 9/38 (23%), Positives = 20/38 (52%)

Query: 285 HQLRQEGKRVISENGEEGWSDVVQENAILNGEVEALRR 322
           HQ+R++ K  ++ +  + W   +++   L   + A RR
Sbjct: 850 HQIRKQKKMELARHAADKWRGAIEKRKTLRASIAAQRR 887


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
            protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 15/45 (33%), Positives = 18/45 (40%)

Query: 1125 DTRTRTPLTTLWSSGATGPCPAGRGAAGEVPVTALRLCAPHTLYT 1169
            D   R PL  ++  G  G  P GR   G +    L   AP  L T
Sbjct: 243  DKALRLPLQDVYKIGGIGTVPVGRVETGILKPGMLVTFAPAALTT 287


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 142 AADLPDGIERDAESDSPEQYETLTAKFHFVDLA 174
           ++ +P   E  A S+SP+ YE  +   H +DL+
Sbjct: 28  SSGIPHSAESSA-SNSPDHYERFSPSTHLMDLS 59


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)

Query: 1303 CGREGAVRVWSADLRAV 1319
            CG+E A R W+AD  AV
Sbjct: 648  CGQEQAFRKWAADTFAV 664


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.130    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 304,425
Number of Sequences: 429
Number of extensions: 10989
Number of successful extensions: 47
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 43
Number of HSP's gapped (non-prelim): 5
length of query: 1367
length of database: 140,377
effective HSP length: 66
effective length of query: 1301
effective length of database: 112,063
effective search space: 145793963
effective search space used: 145793963
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 49 (23.8 bits)