GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003590-TA|BGIBMGA003590-PA|undefined
         (93 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   2.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   3.4  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    20   5.9  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.0 bits (42), Expect = 2.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 37  PVPSKSLIERNKMKAAVTKMVNSV 60
           P+  + L E NK+ + VT+ V +V
Sbjct: 368 PITFRCLEENNKIDSRVTRFVVAV 391


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 3.4
 Identities = 11/31 (35%), Positives = 14/31 (45%)

Query: 44  IERNKMKAAVTKMVNSVAEQQLRALATTTPQ 74
           + RNK    V K  N   EQ   +   TTP+
Sbjct: 762 MSRNKALLPVIKPANVNKEQSPNSTKETTPK 792


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 19.8 bits (39), Expect = 5.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 39  PSKSLIERNKMKAAVTKMVN 58
           PSK L +    KAA+ K+ N
Sbjct: 198 PSKKLAKAAASKAALAKLRN 217


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.307    0.118    0.300 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,587
Number of Sequences: 429
Number of extensions: 331
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 93
length of database: 140,377
effective HSP length: 48
effective length of query: 45
effective length of database: 119,785
effective search space:  5390325
effective search space used:  5390325
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (19.9 bits)
S2: 38 (19.4 bits)