GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003589-TA|BGIBMGA003589-PA|IPR008974|TRAF-like
         (453 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    27   0.32 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    27   0.32 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   4.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   4.0  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   7.0  

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 27.1 bits (57), Expect = 0.32
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 364 LRVRLEWGDTYLLFQATYHVYDDLCRLHAHQMRREIAALQAENYSLERQLFSYQKSL 420
           LR R +   TY  F  TY +Y+ LC  H  ++  E+  L + N +LER + +  + L
Sbjct: 29  LRTRTKLQPTY--FHHTYIIYESLCGRHEKRLLNEL--LSSYN-TLERPVANESEPL 80


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 27.1 bits (57), Expect = 0.32
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 364 LRVRLEWGDTYLLFQATYHVYDDLCRLHAHQMRREIAALQAENYSLERQLFSYQKSL 420
           LR R +   TY  F  TY +Y+ LC  H  ++  E+  L + N +LER + +  + L
Sbjct: 29  LRTRTKLQPTY--FHHTYIIYESLCGRHEKRLLNEL--LSSYN-TLERPVANESEPL 80


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 238 TVELVWARAVAELAVSA 254
           T EL+WAR   ++ +SA
Sbjct: 432 TEELIWARGTKDIPISA 448


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 238 TVELVWARAVAELAVSA 254
           T EL+WAR   ++ +SA
Sbjct: 522 TEELIWARGTKDIPISA 538


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 7/18 (38%), Positives = 13/18 (72%)

Query: 353 AGCTFMHPGGELRVRLEW 370
           A C F++PGG ++ R+ +
Sbjct: 66  AKCEFLNPGGSVKDRIAY 83


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.134    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,545
Number of Sequences: 429
Number of extensions: 4944
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 5
length of query: 453
length of database: 140,377
effective HSP length: 60
effective length of query: 393
effective length of database: 114,637
effective search space: 45052341
effective search space used: 45052341
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 45 (22.2 bits)