GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003587-TA|BGIBMGA003587-PA|IPR006662|Thioredoxin-
related, IPR005792|Protein disulphide isomerase, IPR005788|Disulphide
isomerase, IPR012336|Thioredoxin-like fold, IPR013766|Thioredoxin
domain
         (435 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    26   0.71 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   2.9  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   8.8  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 25.8 bits (54), Expect = 0.71
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 5/47 (10%)

Query: 209  NKFEDSSVAFDGDTEKVSLKAFIKENY--HGLVGVRQKDNIHDFSNP 253
            +KF D S+A DG  E+V LKA     Y   GL G    D+ +DF  P
Sbjct: 1569 DKF-DVSLALDG--ERVMLKASEDYRYSVRGLCGNFDHDSTNDFVGP 1612


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 8/28 (28%), Positives = 17/28 (60%)

Query: 98  YPTLKIFRKGELSSEYNGPRESNGIVKY 125
           Y   K++  GEL+S + GP+  + ++ +
Sbjct: 406 YEEYKMYELGELASSFVGPKVKDCLISW 433


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)

Query: 68  LKTDVPPVALAK 79
           LK+D+PPVA  K
Sbjct: 249 LKSDIPPVAYVK 260


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.135    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,982
Number of Sequences: 429
Number of extensions: 5706
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 3
length of query: 435
length of database: 140,377
effective HSP length: 60
effective length of query: 375
effective length of database: 114,637
effective search space: 42988875
effective search space used: 42988875
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)