GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003585-TA|BGIBMGA003585-PA|IPR008983|TNF-like,
IPR006052|Tumor Necrosis Factor
         (215 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    25   0.54 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    25   0.72 
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    25   0.72 

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 45  NNENAKKYFVEDLGEDMLLVDSRKKNMTQDILDNNIS 81
           NNE     F+  L +  +LV ++   +   I DN+IS
Sbjct: 417 NNEIVTAQFLNQLKKSSVLVHTKNGRLKYQISDNDIS 453


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 24.6 bits (51), Expect = 0.72
 Identities = 8/31 (25%), Positives = 16/31 (51%)

Query: 121 GLYLVYTQVVYLTKESNCYFVWAHQPDKEPR 151
           GL ++Y+ ++ ++   NC  +W     K  R
Sbjct: 59  GLAIIYSMLLIMSLVGNCCVIWIFSTSKSLR 89


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 24.6 bits (51), Expect = 0.72
 Identities = 8/31 (25%), Positives = 16/31 (51%)

Query: 121 GLYLVYTQVVYLTKESNCYFVWAHQPDKEPR 151
           GL ++Y+ ++ ++   NC  +W     K  R
Sbjct: 59  GLAIIYSMLLIMSLVGNCCVIWIFSTSKSLR 89


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.131    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,721
Number of Sequences: 429
Number of extensions: 2508
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 3
length of query: 215
length of database: 140,377
effective HSP length: 55
effective length of query: 160
effective length of database: 116,782
effective search space: 18685120
effective search space used: 18685120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)