GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003580-TA|BGIBMGA003580-PA|IPR001254|Peptidase S1 and
S6, chymotrypsin/Hap, IPR009003|Peptidase, trypsin-like serine and
cysteine
         (255 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...   117   9e-29
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          28   0.095
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    26   0.38 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.51 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   4.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.3  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score =  117 bits (282), Expect = 9e-29
 Identities = 82/252 (32%), Positives = 124/252 (49%), Gaps = 31/252 (12%)

Query: 18  GPTNPQRIVGGTETTIQQYPEMVALLFSFLGTSFSQSCGGSILNSRAVLTAGHCVVGDPA 77
           G  NP RIVGGT T I ++P M  +  ++        CG +I++ R VLTA HC++ +  
Sbjct: 154 GWKNPSRIVGGTNTGINEFPMMAGIKRTY---EPGMICGATIISKRYVLTAAHCIIDENT 210

Query: 78  WRWRLRVG-----SSMPNSGGVVHNTNRIIIHPGYTTSLG-----NDIAIIHSAIRFSFN 127
            +  + VG     S    +  V+H+ N++IIHP Y          NDIA++ +     F 
Sbjct: 211 TKLAIVVGEHDWSSKTETNATVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKFG 270

Query: 128 NAVRPAIIAGSNY--PLADNQVVWAIGWGSISFHGPLSPVLRHVQVYTVNQDICRQRYSE 185
           + V PA +   ++    A + V   +GWG  SF+G LS +L+   +  + Q  C + Y  
Sbjct: 271 DKVGPACLPFQHFLDSFAGSDVT-VLGWGHTSFNGMLSHILQKTTLNMLTQVECYKYYG- 328

Query: 186 IGRSITDNMLCSGILDIGGRDQCQGDSGGP-LFHNRNV-----VGICSWGERCALPRFPG 239
              +I  N +C+      G+D CQ DSGGP L+ N        +GI SWG  C   ++P 
Sbjct: 329 ---NIMVNAMCA---YAKGKDACQMDSGGPVLWQNPRTKRLVNIGIISWGAECG--KYPN 380

Query: 240 VNVRVTRYTAWI 251
            N +V  Y  WI
Sbjct: 381 GNTKVGSYIDWI 392


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 27.9 bits (59), Expect = 0.095
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 167 RHVQVYTVNQDICRQRYSEIGRSITDNMLCSGILDIGGRDQCQGDSGGPL 216
           +H++V+ VN+DI  +   +      +NM+             Q D GGPL
Sbjct: 401 KHIKVFVVNKDILHEHNVDDNEDHDENMIIPP--KKSDMSNMQSDDGGPL 448


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 5/87 (5%)

Query: 96  HNT--NRIIIHPG-YTTSLGNDIAIIHSAIRFSFNNAVRPAIIAGSNYPLADNQVVWAIG 152
           HN   N +   PG +  ++G+  + IH+      ++A  P      + PLA +    AI 
Sbjct: 401 HNNLLNNVYSTPGPHHHTMGHGHSHIHATPHHHHSHAATPH--HQHSTPLAHSSYPAAIQ 458

Query: 153 WGSISFHGPLSPVLRHVQVYTVNQDIC 179
            G    H P  P     QV T+ Q+ C
Sbjct: 459 IGHTPHHHPHPPETPGPQVETILQNAC 485


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 12/126 (9%)

Query: 11  GLAAVTAGPTNPQRIVGGTETTIQQYPEMVALLFSFLGTSFSQSCGGSILNSRAVLTAGH 70
           GLA+V A P +      GT TT         LL   L +   Q  G  + N       GH
Sbjct: 168 GLASVKAEPGST-----GTTTTSTG----TRLLHGIL-SQHPQQHGLGVQNGYGRHLPGH 217

Query: 71  CVVGDPAWRWRLRVGSSMPNSGGVVHN--TNRIIIHPGYTTSLGNDIAIIHSAIRFSFNN 128
             +G P++       +S P SG +  +   + +      T+S GN+ A +    R + N+
Sbjct: 218 AQMGRPSYTTATMATTSTPGSGSLPASPADSGVSDVESSTSSGGNEDANLLLKARLNPNS 277

Query: 129 AVRPAI 134
           +++P++
Sbjct: 278 SLQPSL 283


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 82  LRVGSSMPNSGGVVHNTNRIIIHPGYTTSLGN 113
           +R  S   N GGV H  N  + H  +   LG+
Sbjct: 261 VRRDSRRKNYGGVYHLDNHHVHHANHHAILGH 292


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 179  CRQRYSEIGRSITDNMLCSGILD 201
            CRQR  ++ R   + M+  G+LD
Sbjct: 1008 CRQRNLDLYRQEKEEMVELGVLD 1030


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.138    0.443 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,660
Number of Sequences: 429
Number of extensions: 3148
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 6
length of query: 255
length of database: 140,377
effective HSP length: 56
effective length of query: 199
effective length of database: 116,353
effective search space: 23154247
effective search space used: 23154247
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 43 (21.4 bits)