GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003576-TA|BGIBMGA003576-PA|undefined
         (172 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    27   0.099
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    27   0.099
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   3.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.7  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   6.5  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   8.6  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 27.1 bits (57), Expect = 0.099
 Identities = 14/44 (31%), Positives = 24/44 (54%)

Query: 122 DERARDDLTLKRVETDVARRLQIFTKAEKAREHLEKVAQEHADE 165
           D+R  DD+  +  +   AR + +FT+AE AR  LE   + +  +
Sbjct: 180 DDRMFDDIIQRLSKKANARAVVLFTRAEDARGILEAARRSNLSQ 223


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 27.1 bits (57), Expect = 0.099
 Identities = 14/44 (31%), Positives = 24/44 (54%)

Query: 122 DERARDDLTLKRVETDVARRLQIFTKAEKAREHLEKVAQEHADE 165
           D+R  DD+  +  +   AR + +FT+AE AR  LE   + +  +
Sbjct: 270 DDRMFDDIIQRLSKKANARAVVLFTRAEDARGILEAARRSNLSQ 313


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 18   WFSSYNGTSVKTTVDLYISTSSGSWSRFDLS 48
            W S +NG +  T   L+  T+ G+     LS
Sbjct: 1424 WKSGHNGGASLTGYTLHYRTAHGNLDELQLS 1454


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 18   WFSSYNGTSVKTTVDLYISTSSGSWSRFDLS 48
            W S +NG +  T   L+  T+ G+     LS
Sbjct: 1420 WKSGHNGGASLTGYTLHYRTAHGNLDELQLS 1450


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 148 AEKAREHLEKVAQEHADEW 166
           AE+  E    VAQE  +EW
Sbjct: 612 AEEYTEEAYSVAQEPEEEW 630


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 7/31 (22%), Positives = 19/31 (61%)

Query: 107 YNQFMDRIHVEIKKMDERARDDLTLKRVETD 137
           +++ + R+H  I++ ++R  +    +R+E D
Sbjct: 390 WSRVLGRVHATIERNEKRLAEQDRRERMEFD 420


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.132    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,388
Number of Sequences: 429
Number of extensions: 2539
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 172
length of database: 140,377
effective HSP length: 54
effective length of query: 118
effective length of database: 117,211
effective search space: 13830898
effective search space used: 13830898
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 41 (20.6 bits)