GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003575-TA|BGIBMGA003575-PA|undefined
         (388 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   3.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   3.4  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   5.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   7.7  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 93  LFNEAVLAAVTYFDSKRQKIPNVFDEEK 120
           L+N  ++   T +  K +KIP  F+E K
Sbjct: 679 LYNALLILISTVYAVKTRKIPENFNESK 706


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 93  LFNEAVLAAVTYFDSKRQKIPNVFDEEK 120
           L+N  ++   T +  K +KIP  F+E K
Sbjct: 769 LYNALLILISTVYAVKTRKIPENFNESK 796


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 5.9
 Identities = 11/44 (25%), Positives = 21/44 (47%)

Query: 278 DMEREILKQFIKSKYDDLRELNDAANETAIASAVNVYIEKMDKA 321
           D+E+   +     K D L+E+ +  N++       V++E   KA
Sbjct: 421 DVEQNFYEVARNKKKDLLKEILERENDSGTLGGTLVFVEMKKKA 464


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 7.7
 Identities = 8/26 (30%), Positives = 13/26 (50%)

Query: 69  VFDNTVKAVHGENLFCLHPNDVEPLF 94
           V DN  K V   +++C +  D  P +
Sbjct: 940 VSDNAHKVVDASDVWCYYGGDARPAY 965


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 7.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 79  GENLFCLHPNDVEPLFNEAVLAAVTYFDSKR 109
           GE +  LH ++VE +F   +  ++ Y D +R
Sbjct: 489 GEWMGVLHGDEVEYVFGHPLNKSLKYSDKER 519


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.135    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,156
Number of Sequences: 429
Number of extensions: 5453
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 6
length of query: 388
length of database: 140,377
effective HSP length: 59
effective length of query: 329
effective length of database: 115,066
effective search space: 37856714
effective search space used: 37856714
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)