GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003571-TA|BGIBMGA003571-PA|undefined
         (100 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    20   5.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   5.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   5.0  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 9/35 (25%), Positives = 17/35 (48%)

Query: 66  SIFAIVILFWTIELYYKKSKHKREMSSRSRQVNLK 100
           +++ IVIL W I  ++   + +    S +   N K
Sbjct: 74  NVYYIVILAWAIFYFFMSMRSELPWGSCNNYWNTK 108


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 9/14 (64%), Positives = 10/14 (71%)

Query: 7    TINVLAFILVGESV 20
            TI VLAF  VG+ V
Sbjct: 1187 TIQVLAFTRVGDGV 1200


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 9/14 (64%), Positives = 10/14 (71%)

Query: 7    TINVLAFILVGESV 20
            TI VLAF  VG+ V
Sbjct: 1183 TIQVLAFTRVGDGV 1196


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.133    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,458
Number of Sequences: 429
Number of extensions: 490
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 100
length of database: 140,377
effective HSP length: 49
effective length of query: 51
effective length of database: 119,356
effective search space:  6087156
effective search space used:  6087156
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.6 bits)
S2: 38 (19.4 bits)