GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003570-TA|BGIBMGA003570-PA|undefined
         (186 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    31   0.005
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               26   0.19 
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    25   0.34 
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    25   0.45 
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    25   0.45 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   1.4  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 31.5 bits (68), Expect = 0.005
 Identities = 29/133 (21%), Positives = 60/133 (45%), Gaps = 7/133 (5%)

Query: 44  QHFNKDLSIEEKYNKF--IQILKEATRKTNTEDNRAISKQTQELLQERKNLIKGKEDKYK 101
           ++ N DL  ++  NK   ++ L +     NT D+   S +  + + +  +  K     Y+
Sbjct: 373 EYNNNDLDTKKWNNKISALRALNDLYNVKNTLDSYNGSMEINQNIAQNIDHAKNTIIDYR 432

Query: 102 ISEISKKINEQIRKDRKIKRDNTMKKHIEKTGGIKKAIKELTVKKDWMPKVKTDKNNYTC 161
            +++S  INE+    R I+ +   + +      I K  K++ ++    PK  T +N    
Sbjct: 433 NNDLS--INEE---KRTIENEQLNRMYKSYPNYIDKETKDMNLEISTRPKSNTVENACVL 487

Query: 162 KRPEILELATDYY 174
           K  EI +  +D++
Sbjct: 488 KNTEIFKDKSDWF 500


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 26.2 bits (55), Expect = 0.19
 Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%)

Query: 144 VKKDWMPKVKTDKNNYTCKRPE-ILEL 169
           V   WMP ++     +TC++PE ++EL
Sbjct: 472 VWNSWMPSIRGAIQQWTCRQPEPLIEL 498



 Score = 20.6 bits (41), Expect = 9.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 75  NRAISKQTQELLQERKNLIKGKEDKY 100
           +R + +  Q  LQE  +  K  +DKY
Sbjct: 380 DRLMDETNQLTLQETADAFKDLQDKY 405


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 21/119 (17%), Positives = 48/119 (40%), Gaps = 2/119 (1%)

Query: 64  KEATRKTNTEDNRAISKQTQELLQERKNLIKGKEDKYKISEISKKINEQIRKDRKIKRDN 123
           +  +R  N E  R   +Q ++L  E++ L++ +  + + S   ++     + +++ ++  
Sbjct: 2   RSCSRDRNRE-YRKKDRQYEKLHNEKEKLLEERTSRKRYSRSREREQNSYKNEKEYRKYR 60

Query: 124 TMKKHIEKTGGIKKAIKELTVKKDWMPKVKTDKNNYTCKRPEILEL-ATDYYKKLYKSN 181
              K   +    ++  +E  +      K   + NNY             +Y KKLY  N
Sbjct: 61  ETSKERSRDRTERERSREPKIISSLSNKTIHNNNNYKYNYNNKYNYNNNNYNKKLYYKN 119


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.0 bits (52), Expect = 0.45
 Identities = 20/115 (17%), Positives = 48/115 (41%), Gaps = 8/115 (6%)

Query: 64  KEATRKTNTEDNRAISKQTQELLQERKNLIKGKEDKYKISEISKKINEQIRKDRKIKRDN 123
           +  +R  N E      ++ ++L  E++ L++ +  + + S   ++     + +R+ ++  
Sbjct: 2   RSCSRDRNREYKEK-DRRYEKLHNEKEKLLEERTSRKRYSRSREREQNSYKNEREYRKYR 60

Query: 124 TMKKHIEKTGGIKKAIKELTVKKDWMPKVKTDKNNYTCKRPEILELATDYYKKLY 178
              K   +    ++  KE  +       + +  NNY        +L  + YKKLY
Sbjct: 61  ETSKERSRDRKEREKSKEHKI-------ISSLSNNYNYNNNNYKKLYCNNYKKLY 108


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.0 bits (52), Expect = 0.45
 Identities = 20/115 (17%), Positives = 48/115 (41%), Gaps = 8/115 (6%)

Query: 64  KEATRKTNTEDNRAISKQTQELLQERKNLIKGKEDKYKISEISKKINEQIRKDRKIKRDN 123
           +  +R  N E      ++ ++L  E++ L++ +  + + S   ++     + +R+ ++  
Sbjct: 2   RSCSRDRNREYKEK-DRRYEKLHNEKEKLLEERTSRKRYSRSREREQNSYKNEREYRKYR 60

Query: 124 TMKKHIEKTGGIKKAIKELTVKKDWMPKVKTDKNNYTCKRPEILELATDYYKKLY 178
              K   +    ++  KE  +       + +  NNY        +L  + YKKLY
Sbjct: 61  ETSKERSRDRKEREKSKEHKI-------ISSLSNNYNYNNNNYKKLYCNNYKKLY 108


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 6/105 (5%)

Query: 53  EEKYNKFIQILKEATRKTNTEDNRAISKQTQELLQERKNL---IKGKEDKYKISEISKKI 109
           E+  N   +   +  RKT T     IS + ++   E KN+       E    ++ ++  I
Sbjct: 780 EQSPNSTKETTPKKERKTATTTQPVISSRKEQKKSEEKNINDHCVTTEQSVVVTNVTTTI 839

Query: 110 NEQIRKDRKIKRDNTMKKHIEKTGGIKKAIKELTVKKDWMPKVKT 154
           N        I    T    I        +I  +TV+KD +  VKT
Sbjct: 840 NTPTTS--VISMSGTTVP-ITSLPASSTSINSITVEKDVINDVKT 881


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.128    0.352 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,116
Number of Sequences: 429
Number of extensions: 2422
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 186
length of database: 140,377
effective HSP length: 54
effective length of query: 132
effective length of database: 117,211
effective search space: 15471852
effective search space used: 15471852
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.4 bits)
S2: 41 (20.6 bits)