GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003568-TA|BGIBMGA003568-PA|IPR001254|Peptidase S1 and
S6, chymotrypsin/Hap, IPR009003|Peptidase, trypsin-like serine and
cysteine
         (256 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    81   1e-17
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   4.8  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 80.6 bits (190), Expect = 1e-17
 Identities = 71/245 (28%), Positives = 100/245 (40%), Gaps = 25/245 (10%)

Query: 22  SRIVGGTATTIDRYPTMAAALFSSNMAQWWQGCGCSILNNRAVLTAAHCIIXXXXXXXXX 81
           SRIVGGT T I+ +P MA    +         CG +I++ R VLTAAHCII         
Sbjct: 159 SRIVGGTNTGINEFPMMAGIKRTYEPGMI---CGATIISKRYVLTAAHCIIDENTTKLAI 215

Query: 82  XX-----XXXXXXXXXXXHEVNRHIIHPNYNHRTKD----ADIAIMRTVLRINFVRNTVQ 132
                             H +N+ IIHP Y+   KD     DIA+++T   I F  + V 
Sbjct: 216 VVGEHDWSSKTETNATVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKF-GDKVG 274

Query: 133 PARIAGSNY--NLADNQVVWAAGWGSTRTGSGFAEQLRHVQVWTINQAICRERYSRIDRP 190
           PA +   ++  + A + V    GWG T      +  L+   +  + Q  C + Y      
Sbjct: 275 PACLPFQHFLDSFAGSDVT-VLGWGHTSFNGMLSHILQKTTLNMLTQVECYKYYGN---- 329

Query: 191 ITANMLCS---GWLDVXXXXXXXXXXXXPLYHNGVVVGVCSWGFSCGSAFYPGVNVRVSR 247
           I  N +C+   G                P     V +G+ SWG  CG   YP  N +V  
Sbjct: 330 IMVNAMCAYAKGKDACQMDSGGPVLWQNPRTKRLVNIGIISWGAECGK--YPNGNTKVGS 387

Query: 248 FSSWI 252
           +  WI
Sbjct: 388 YIDWI 392


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 176 NQAICRERYSRIDRPITANM 195
           N AI  +RYS I RP+   +
Sbjct: 138 NAAIAYDRYSTIARPLDGKL 157


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.133    0.443 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,513
Number of Sequences: 429
Number of extensions: 2177
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 2
length of query: 256
length of database: 140,377
effective HSP length: 56
effective length of query: 200
effective length of database: 116,353
effective search space: 23270600
effective search space used: 23270600
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 43 (21.4 bits)