GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003567-TA|BGIBMGA003567-PA|IPR001254|Peptidase S1 and
S6, chymotrypsin/Hap, IPR009003|Peptidase, trypsin-like serine and
cysteine
         (256 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...   116   2e-28
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.3  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   8.3  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score =  116 bits (280), Expect = 2e-28
 Identities = 77/252 (30%), Positives = 126/252 (50%), Gaps = 28/252 (11%)

Query: 21  NPQRIIGGSTTNINQYPGIAALLYTWNWNQWWQSCGGNILNQRSILSAAHCPYGDATGRW 80
           NP RI+GG+ T IN++P +A +  T+   +    CG  I+++R +L+AAHC   + T + 
Sbjct: 157 NPSRIVGGTNTGINEFPMMAGIKRTY---EPGMICGATIISKRYVLTAAHCIIDENTTKL 213

Query: 81  RIRVG-----STFANSGGVVHNVNRIIIHPNYNRRTAD----SDLCILRSNSNIAYNNNV 131
            I VG     S    +  V+H++N++IIHP Y+    D    +D+ +L++  +I + + V
Sbjct: 214 AIVVGEHDWSSKTETNATVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKFGDKV 273

Query: 132 RPINIAGANY-NLGDNQVVWAAGWGATSLGGSNSEQLRHVQVWTINQNACVQRYRPINRA 190
            P  +   ++ +      V   GWG TS  G  S  L+   +  + Q  C + Y      
Sbjct: 274 GPACLPFQHFLDSFAGSDVTVLGWGHTSFNGMLSHILQKTTLNMLTQVECYKYY----GN 329

Query: 191 ITANMLCSGVLDVGGRDQCQGDSGGPLLHNR------VLVGVCSWGQYCADRRFPGVNVR 244
           I  N +C+      G+D CQ DSGGP+L         V +G+ SWG  C   ++P  N +
Sbjct: 330 IMVNAMCA---YAKGKDACQMDSGGPVLWQNPRTKRLVNIGIISWGAECG--KYPNGNTK 384

Query: 245 VSRFTSWIQSNS 256
           V  +  WI S +
Sbjct: 385 VGSYIDWIVSQT 396


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 33   INQYPGIAALLYTWNWNQWWQ 53
            +  Y   AA + TWN  ++W+
Sbjct: 1178 LRPYLRTAAAILTWNEKRFWE 1198


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 82  IRVGSTFANSGGVVHNVNRIIIHPNYN 108
           +R  S   N GGV H  N  + H N++
Sbjct: 261 VRRDSRRKNYGGVYHLDNHHVHHANHH 287


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,261
Number of Sequences: 429
Number of extensions: 3938
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 3
length of query: 256
length of database: 140,377
effective HSP length: 56
effective length of query: 200
effective length of database: 116,353
effective search space: 23270600
effective search space used: 23270600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)