GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003565-TA|BGIBMGA003565-PA|undefined
         (439 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    27   0.41 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   2.9  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   8.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   8.9  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 26.6 bits (56), Expect = 0.41
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 71  DLSEIYDKPIVDTEPSRISNDSQNYNLIKSEFS 103
           +L  IY+ P  D E  R+S  + N N I S+ S
Sbjct: 320 NLVYIYNNPFSDVEERRVSKTAMNSNQIVSDNS 352



 Score = 22.2 bits (45), Expect = 8.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 269  KLSEYWNKITVSVMQQILDVFIQEKYLSVQSFA 301
            KL+EY +K  V V   I+D   ++  LS   F+
Sbjct: 1387 KLNEYLDKADVIVNTPIMDAHFKDVKLSDFGFS 1419


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 11/37 (29%), Positives = 18/37 (48%)

Query: 110 DVFTLLSKCTKITPSIALGAIERIYTLEKNPTQNVHV 146
           DV T    C++ITP   +  +  +Y+L    T+   V
Sbjct: 429 DVVTFTEICSRITPMEVVSMLNAMYSLFDTLTERNRV 465


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 8.9
 Identities = 7/39 (17%), Positives = 22/39 (56%)

Query: 28  NSTFRRSFSDDKNRSNPQFSNSTIMVEHGYNVQELPVLV 66
           N+ ++ ++++  N +N  ++       +  N++++PV V
Sbjct: 93  NNNYKYNYNNKYNYNNNNYNKKLYYKNYIINIEQIPVPV 131


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 8.9
 Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 2/80 (2%)

Query: 33  RSFSDDKNRSNPQFSNSTIMVEHGYNVQELPVLV-RTLTDLSEIYDKPIVDTEPSRISND 91
           R+F++ +NR N     ST      +N Q+    +  + ++L E     +++  P R  +D
Sbjct: 367 RNFNESENRRN-SCLGSTETYYSKHNTQQFTQYIPESSSNLQEKTKIDLLEIPPIRKISD 425

Query: 92  SQNYNLIKSEFSQCLDLRDV 111
               + +  + S  ++L+ V
Sbjct: 426 CSTTSSLSGDESDVVELQPV 445


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.135    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,155
Number of Sequences: 429
Number of extensions: 4076
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 5
length of query: 439
length of database: 140,377
effective HSP length: 60
effective length of query: 379
effective length of database: 114,637
effective search space: 43447423
effective search space used: 43447423
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)