GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003564-TA|BGIBMGA003564-PA|IPR005814|Aminotransferase
class-III, IPR010164|Ornithine aminotransferase
         (407 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   1.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   1.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   1.5  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    25   1.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.7  
AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    23   6.2  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 300  VATEAIKVLLDEKLSENAERMGKILREELSQIPKTQIRTVRGRGLMCAIVVDDSIPASEL 359
            VA+ +I V    K  +  E    IL+ +       Q +   G  L  A ++D+  PA+  
Sbjct: 919  VASRSINVKWQHKSQDTTEVTKYILQYKEGDAGIWQQQEFTGPPLPYAALIDELKPATRY 978

Query: 360  CLRLRDNGLLAKPTHGQTVRLAPPLVITEAQIRDGADI 397
             +R     ++A+   G++V  A  +V TE Q   G  I
Sbjct: 979  TIR-----VIAEGPAGRSVPSAELIVRTEPQRPAGPPI 1011


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 300  VATEAIKVLLDEKLSENAERMGKILREELSQIPKTQIRTVRGRGLMCAIVVDDSIPASEL 359
            VA+ +I V    K  +  E    IL+ +       Q +   G  L  A ++D+  PA+  
Sbjct: 915  VASRSINVKWQHKSQDTTEVTKYILQYKEGDAGIWQQQEFTGPPLPYAALIDELKPATRY 974

Query: 360  CLRLRDNGLLAKPTHGQTVRLAPPLVITEAQIRDGADI 397
             +R     ++A+   G++V  A  +V TE Q   G  I
Sbjct: 975  TIR-----VIAEGPAGRSVPSAELIVRTEPQRPAGPPI 1007


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.6 bits (51), Expect = 1.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 271 AVLTSNDIMDVIKPGTHGSTY 291
           A+L  N   D+IK  T GSTY
Sbjct: 826 AILDQNKFKDIIKIKTIGSTY 846


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.6 bits (51), Expect = 1.5
 Identities = 13/41 (31%), Positives = 22/41 (53%)

Query: 65  IIEALKKQADNLTLVSRAFYSDQLGKYEKYMTELFGYDRLL 105
           +I  L K+A  +  V+   + DQ+G +       +GYDR+L
Sbjct: 46  LIPRLAKKAIQVLGVTEKEFFDQMGVHFVGFVGQYGYDRVL 86


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 238  GRTGKLLAVEHEGVKPDILILGKALSGGVLPVSAVLTSND 277
            GRT +L+ V+ E   P++  L + L   +   +A+LT N+
Sbjct: 1155 GRTAQLIIVQAENAYPEV-ELDRELRPYLRTAAAILTWNE 1193


>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 22.6 bits (46), Expect = 6.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 150 LSAVSSSSDPTCYQGFGPYM 169
           L+ VSS      + GFGPY+
Sbjct: 14  LATVSSQDYSQLFAGFGPYI 33


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.137    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,355
Number of Sequences: 429
Number of extensions: 4834
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 6
length of query: 407
length of database: 140,377
effective HSP length: 59
effective length of query: 348
effective length of database: 115,066
effective search space: 40042968
effective search space used: 40042968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)