GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003563-TA|BGIBMGA003563-PA|undefined
         (133 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   2.0  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   2.0  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   2.0  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   2.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   2.0  
U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    21   4.5  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   4.5  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   4.5  
AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor pro...    21   4.5  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)

Query: 64  MRRKEPPSEEEIAKNV-AIAQI 84
           +R+KEPP    +AK +  IA+I
Sbjct: 447 LRKKEPPHPIRVAKTIDVIARI 468


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)

Query: 64  MRRKEPPSEEEIAKNV-AIAQI 84
           +R+KEPP    +AK +  IA+I
Sbjct: 433 LRKKEPPHPIRVAKTIDVIARI 454


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)

Query: 64  MRRKEPPSEEEIAKNV-AIAQI 84
           +R+KEPP    +AK +  IA+I
Sbjct: 467 LRKKEPPHPIRVAKTIDVIARI 488


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)

Query: 64  MRRKEPPSEEEIAKNV-AIAQI 84
           +R+KEPP    +AK +  IA+I
Sbjct: 416 LRKKEPPHPIRVAKTIDVIARI 437


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 11/45 (24%), Positives = 22/45 (48%)

Query: 53  PIPAEWESWLRMRRKEPPSEEEIAKNVAIAQIKKENAAKIEMKRL 97
           PI A+++    +   EP   E I K   ++   + N  K+++K +
Sbjct: 639 PIDAQFDIIQNIYIPEPQDIENIFKYGYVSHANQRNMYKLDLKNM 683


>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.
          Length = 53

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query: 103 LPAVPERGPQSYPTY 117
           LP VP+ G + +PT+
Sbjct: 23  LPNVPQPGRRPFPTF 37


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 11/36 (30%), Positives = 15/36 (41%)

Query: 11  GNFKNGKDYIGNTYFEIPASPSEGKRKPSRWYDPPK 46
           GN  N  D    T+     +  E  +KP   Y PP+
Sbjct: 122 GNQDNRNDRRKKTFAAREDNDEEEAQKPKEQYIPPE 157


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 8/25 (32%), Positives = 12/25 (48%)

Query: 3   KCLWEINIGNFKNGKDYIGNTYFEI 27
           K  WE        G +Y+GN  +E+
Sbjct: 152 KEFWERRALQISEGVEYVGNIRWEL 176


>AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor
           protein.
          Length = 33

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query: 103 LPAVPERGPQSYPTY 117
           LP VP+ G + +PT+
Sbjct: 9   LPNVPQPGRRPFPTF 23


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.310    0.131    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,045
Number of Sequences: 429
Number of extensions: 2462
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 133
length of database: 140,377
effective HSP length: 52
effective length of query: 81
effective length of database: 118,069
effective search space:  9563589
effective search space used:  9563589
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (20.8 bits)
S2: 40 (20.2 bits)