GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003559-TA|BGIBMGA003559-PA|undefined
         (73 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   1.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   2.0  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              20   2.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    19   8.2  

>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
          protein-1 protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 1.2
 Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 4  CGRCGDPASECGQCDDLAGECG--QCDDLAGE-CGQCGDMAGEC 44
          C  CGD   +C     ++  CG  QC     E CG   +  G C
Sbjct: 36 CLGCGDSCHKCKYGIAMSSACGIVQCAKGPDELCGGPQNYLGIC 79


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 20.6 bits (41), Expect = 2.0
 Identities = 8/23 (34%), Positives = 11/23 (47%)

Query: 26  QCDDLAGECGQCGDMAGECGRRR 48
           Q  D  G+C    ++ G   RRR
Sbjct: 387 QSTDFVGDCSSLLNLPGNDARRR 409


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 20.2 bits (40), Expect = 2.7
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 34 CGQCGDMA 41
          CG CGD+A
Sbjct: 78 CGACGDIA 85



 Score = 19.8 bits (39), Expect = 3.6
 Identities = 7/14 (50%), Positives = 7/14 (50%)

Query: 4  CGRCGDPASECGQC 17
          CG CGD A     C
Sbjct: 78 CGACGDIAHTVKYC 91



 Score = 18.6 bits (36), Expect = 8.2
 Identities = 6/14 (42%), Positives = 7/14 (50%)

Query: 14 CGQCDDLAGECGQC 27
          CG C D+A     C
Sbjct: 78 CGACGDIAHTVKYC 91



 Score = 18.6 bits (36), Expect = 8.2
 Identities = 6/14 (42%), Positives = 7/14 (50%)

Query: 24 CGQCDDLAGECGQC 37
          CG C D+A     C
Sbjct: 78 CGACGDIAHTVKYC 91


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 18.6 bits (36), Expect = 8.2
 Identities = 6/10 (60%), Positives = 7/10 (70%)

Query: 31  AGECGQCGDM 40
           AGECG   D+
Sbjct: 170 AGECGPAADV 179


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.325    0.142    0.481 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,966
Number of Sequences: 429
Number of extensions: 648
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 73
length of database: 140,377
effective HSP length: 46
effective length of query: 27
effective length of database: 120,643
effective search space:  3257361
effective search space used:  3257361
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.7 bits)
S2: 36 (18.6 bits)