GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003554-TA|BGIBMGA003554-PA|IPR001680|WD-40 repeat,
IPR011046|WD40-like
         (333 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               30   0.032
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           25   1.2  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   8.6  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 29.9 bits (64), Expect = 0.032
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 155 LRSGSGPIYVYTPHKGPVLGLDEYDNLIASISEDKT-LAVWDRRAGKI 201
           LR G G I  Y P KGP +   + ++ I    E KT L+ W +  G +
Sbjct: 192 LRKGRGAIGAYGPEKGPKVPEKKKEDEIDEGKESKTKLSQWRKDGGTV 239


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 6/88 (6%)

Query: 36  NGELCISGGRDRGMALWNVSDISAKSETNDGVTSLTDTKPKHLRHDA-----HAGWVWDL 90
           +G+         G+ +W         +  DG+     T PKH +  +     +  W W  
Sbjct: 179 DGDFITENNLPLGLEVWRDKVFITLPKWKDGIPVTLTTVPKHSKTKSPKLRPYPNWEWHT 238

Query: 91  AADVVNSASKVYSASWDNTVKAWDLATG 118
             +  +  + V+    D   + W L +G
Sbjct: 239 VGN-CDGLTSVFRIQVDECDRLWILDSG 265


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
          protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/21 (33%), Positives = 11/21 (52%)

Query: 33 LVNNGELCISGGRDRGMALWN 53
          L++NG+         GM +WN
Sbjct: 40 LISNGDYIEENNMPNGMQIWN 60


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,554
Number of Sequences: 429
Number of extensions: 3388
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 3
length of query: 333
length of database: 140,377
effective HSP length: 58
effective length of query: 275
effective length of database: 115,495
effective search space: 31761125
effective search space used: 31761125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)