GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003553-TA|BGIBMGA003553-PA|undefined
         (267 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    25   0.93 
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    25   0.93 
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              21   8.7  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   8.7  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 44  LILASAALGILVWSVTVSPTPTWLVFLTNWGLVLVAMTTLNGLVLSCIALCRKNM 98
           +I  +A  G    +  + P P    FL +WG+  V +TT+ G+V       R+ M
Sbjct: 187 IIYRAAYFGFYDTARGMLPDPKKTPFLISWGIAQV-VTTVAGIVSYPFDTVRRRM 240


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 44  LILASAALGILVWSVTVSPTPTWLVFLTNWGLVLVAMTTLNGLVLSCIALCRKNM 98
           +I  +A  G    +  + P P    FL +WG+  V +TT+ G+V       R+ M
Sbjct: 187 IIYRAAYFGFYDTARGMLPDPKKTPFLISWGIAQV-VTTVAGIVSYPFDTVRRRM 240


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 105 WFVSTYWFL 113
           W VS YW+L
Sbjct: 7   WLVSLYWYL 15


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 80  MTTLNGLVLSCIALCRKNMDGDG 102
           MT    +V+SC   C  N+ G G
Sbjct: 1   MTKGRHVVMSCCCWCCDNLGGPG 23


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.326    0.139    0.462 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,640
Number of Sequences: 429
Number of extensions: 2971
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 4
length of query: 267
length of database: 140,377
effective HSP length: 57
effective length of query: 210
effective length of database: 115,924
effective search space: 24344040
effective search space used: 24344040
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 43 (21.4 bits)