GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003552-TA|BGIBMGA003552-PA|undefined
         (499 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR456580-1|CAG30466.1|  635|Homo sapiens SLC7A4 protein.               38   0.11 
BC107161-1|AAI07162.1|  635|Homo sapiens solute carrier family 7...    38   0.11 
BC107160-1|AAI07161.1|  635|Homo sapiens solute carrier family 7...    38   0.11 
BC062565-1|AAH62565.1|  635|Homo sapiens solute carrier family 7...    38   0.11 
BC008814-1|AAH08814.1|  635|Homo sapiens solute carrier family 7...    38   0.11 
AJ000730-1|CAA04263.1|  636|Homo sapiens cationic amino acid tra...    38   0.11 
BC040523-1|AAH40523.1| 1551|Homo sapiens CCR4-NOT transcription ...    32   4.1  
BC043595-1|AAH43595.1|  541|Homo sapiens RFT1 homolog (S. cerevi...    32   5.4  
AJ318099-1|CAC69544.1|  541|Homo sapiens putative endoplasmic re...    32   5.4  
BC082968-1|AAH82968.1|  636|Homo sapiens KIAA0467 protein protein.     31   7.1  
BC052802-1|AAH52802.1|  579|Homo sapiens KIAA0467 protein protein.     31   7.1  
BC041069-1|AAH41069.1|  630|Homo sapiens KIAA0467 protein protein.     31   7.1  
AL583862-3|CAI14888.1|  521|Homo sapiens KIAA0467 protein.             31   7.1  
AL583862-2|CAI14887.1|  631|Homo sapiens KIAA0467 protein.             31   7.1  
AL583862-1|CAI14886.1| 2102|Homo sapiens KIAA0467 protein.             31   7.1  
AK126972-1|BAC86771.1|  521|Homo sapiens PTPRF), interacting pro...    31   7.1  
AB007936-1|BAA32312.2| 2687|Homo sapiens KIAA0467 protein protein.     31   7.1  

>CR456580-1|CAG30466.1|  635|Homo sapiens SLC7A4 protein.
          Length = 635

 Score = 37.5 bits (83), Expect = 0.11
 Identities = 16/46 (34%), Positives = 27/46 (58%)

Query: 54  GILMASLILTSQSMTFGYWTIYLTHWGIILITITSGAALAVSLVSL 99
           G+++AS I     + FG  T++L HWG IL+ + +     +SL+ L
Sbjct: 483 GVMLASAITIGCVLVFGNSTLHLPHWGYILLLLLTSVMFLLSLLVL 528


>BC107161-1|AAI07162.1|  635|Homo sapiens solute carrier family 7
           (cationic amino acid transporter, y+ system), member 4
           protein.
          Length = 635

 Score = 37.5 bits (83), Expect = 0.11
 Identities = 16/46 (34%), Positives = 27/46 (58%)

Query: 54  GILMASLILTSQSMTFGYWTIYLTHWGIILITITSGAALAVSLVSL 99
           G+++AS I     + FG  T++L HWG IL+ + +     +SL+ L
Sbjct: 483 GVMLASAITIGCVLVFGNSTLHLPHWGYILLLLLTSVMFLLSLLVL 528


>BC107160-1|AAI07161.1|  635|Homo sapiens solute carrier family 7
           (cationic amino acid transporter, y+ system), member 4
           protein.
          Length = 635

 Score = 37.5 bits (83), Expect = 0.11
 Identities = 16/46 (34%), Positives = 27/46 (58%)

Query: 54  GILMASLILTSQSMTFGYWTIYLTHWGIILITITSGAALAVSLVSL 99
           G+++AS I     + FG  T++L HWG IL+ + +     +SL+ L
Sbjct: 483 GVMLASAITIGCVLVFGNSTLHLPHWGYILLLLLTSVMFLLSLLVL 528


>BC062565-1|AAH62565.1|  635|Homo sapiens solute carrier family 7
           (cationic amino acid transporter, y+ system), member 4
           protein.
          Length = 635

 Score = 37.5 bits (83), Expect = 0.11
 Identities = 16/46 (34%), Positives = 27/46 (58%)

Query: 54  GILMASLILTSQSMTFGYWTIYLTHWGIILITITSGAALAVSLVSL 99
           G+++AS I     + FG  T++L HWG IL+ + +     +SL+ L
Sbjct: 483 GVMLASAITIGCVLVFGNSTLHLPHWGYILLLLLTSVMFLLSLLVL 528


>BC008814-1|AAH08814.1|  635|Homo sapiens solute carrier family 7
           (cationic amino acid transporter, y+ system), member 4
           protein.
          Length = 635

 Score = 37.5 bits (83), Expect = 0.11
 Identities = 16/46 (34%), Positives = 27/46 (58%)

Query: 54  GILMASLILTSQSMTFGYWTIYLTHWGIILITITSGAALAVSLVSL 99
           G+++AS I     + FG  T++L HWG IL+ + +     +SL+ L
Sbjct: 483 GVMLASAITIGCVLVFGNSTLHLPHWGYILLLLLTSVMFLLSLLVL 528


>AJ000730-1|CAA04263.1|  636|Homo sapiens cationic amino acid
           transporter 3 protein.
          Length = 636

 Score = 37.5 bits (83), Expect = 0.11
 Identities = 16/46 (34%), Positives = 27/46 (58%)

Query: 54  GILMASLILTSQSMTFGYWTIYLTHWGIILITITSGAALAVSLVSL 99
           G+++AS I     + FG  T++L HWG IL+ + +     +SL+ L
Sbjct: 484 GVMLASAITIGCVLVFGNSTLHLPHWGYILLLLLTSVMFLLSLLVL 529


>BC040523-1|AAH40523.1| 1551|Homo sapiens CCR4-NOT transcription
            complex, subunit 1 protein.
          Length = 1551

 Score = 32.3 bits (70), Expect = 4.1
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 80   GIILITITSGAALAVS--LVSLKTGCIEASFVLPWYVKAYWVCFNITVPIAFFITIFYWS 137
            G+ +IT      +++S  L +     +  S++ PWY    + C  ++V I FF+ I++W+
Sbjct: 1451 GMAMITCREPLLMSISTNLKNSFASALRVSWLFPWYRYKTYYC--LSVIIFFFVYIWHWA 1508

Query: 138  L 138
            L
Sbjct: 1509 L 1509


>BC043595-1|AAH43595.1|  541|Homo sapiens RFT1 homolog (S.
           cerevisiae) protein.
          Length = 541

 Score = 31.9 bits (69), Expect = 5.4
 Identities = 15/47 (31%), Positives = 24/47 (51%)

Query: 267 LSTVISSMTFYVMNDKFGYWFIYLTHWGLTINTLATGFATAVSARCY 313
           L  +  S++  + +    +  ++L HWGL I +LA  F T V   CY
Sbjct: 151 LKVIAESLSVILKSVLTAFLVLWLPHWGLYIFSLAQLFYTTVLVLCY 197


>AJ318099-1|CAC69544.1|  541|Homo sapiens putative endoplasmic
           reticulum multispan transmembrane protein protein.
          Length = 541

 Score = 31.9 bits (69), Expect = 5.4
 Identities = 15/47 (31%), Positives = 24/47 (51%)

Query: 267 LSTVISSMTFYVMNDKFGYWFIYLTHWGLTINTLATGFATAVSARCY 313
           L  +  S++  + +    +  ++L HWGL I +LA  F T V   CY
Sbjct: 151 LKVIAESLSVILKSVLTAFLVLWLPHWGLYIFSLAQLFYTTVLVLCY 197


>BC082968-1|AAH82968.1|  636|Homo sapiens KIAA0467 protein protein.
          Length = 636

 Score = 31.5 bits (68), Expect = 7.1
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 148 MDPILDVFIH-AVNAILMLVLLMFSRHPVRCLHFHHPLLLGVVYLI 192
           +DP LD F+   V+    L+ ++ SR P  C HF  P  LG  YL+
Sbjct: 523 IDPQLDCFLSMTVSWYQSLIKVLLSRFPQSCRHFQSP-DLGTQYLV 567


>BC052802-1|AAH52802.1|  579|Homo sapiens KIAA0467 protein protein.
          Length = 579

 Score = 31.5 bits (68), Expect = 7.1
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 148 MDPILDVFIH-AVNAILMLVLLMFSRHPVRCLHFHHPLLLGVVYLI 192
           +DP LD F+   V+    L+ ++ SR P  C HF  P  LG  YL+
Sbjct: 466 IDPQLDCFLSMTVSWYQSLIKVLLSRFPQSCRHFQSP-DLGTQYLV 510


>BC041069-1|AAH41069.1|  630|Homo sapiens KIAA0467 protein protein.
          Length = 630

 Score = 31.5 bits (68), Expect = 7.1
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 148 MDPILDVFIH-AVNAILMLVLLMFSRHPVRCLHFHHPLLLGVVYLI 192
           +DP LD F+   V+    L+ ++ SR P  C HF  P  LG  YL+
Sbjct: 517 IDPQLDCFLSMTVSWYQSLIKVLLSRFPQSCRHFQSP-DLGTQYLV 561


>AL583862-3|CAI14888.1|  521|Homo sapiens KIAA0467 protein.
          Length = 521

 Score = 31.5 bits (68), Expect = 7.1
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 148 MDPILDVFIH-AVNAILMLVLLMFSRHPVRCLHFHHPLLLGVVYLI 192
           +DP LD F+   V+    L+ ++ SR P  C HF  P  LG  YL+
Sbjct: 408 IDPQLDCFLSMTVSWYQSLIKVLLSRFPQSCRHFQSP-DLGTQYLV 452


>AL583862-2|CAI14887.1|  631|Homo sapiens KIAA0467 protein.
          Length = 631

 Score = 31.5 bits (68), Expect = 7.1
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 148 MDPILDVFIH-AVNAILMLVLLMFSRHPVRCLHFHHPLLLGVVYLI 192
           +DP LD F+   V+    L+ ++ SR P  C HF  P  LG  YL+
Sbjct: 518 IDPQLDCFLSMTVSWYQSLIKVLLSRFPQSCRHFQSP-DLGTQYLV 562


>AL583862-1|CAI14886.1| 2102|Homo sapiens KIAA0467 protein.
          Length = 2102

 Score = 31.5 bits (68), Expect = 7.1
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 148  MDPILDVFIH-AVNAILMLVLLMFSRHPVRCLHFHHPLLLGVVYLI 192
            +DP LD F+   V+    L+ ++ SR P  C HF  P  LG  YL+
Sbjct: 1948 IDPQLDCFLSMTVSWYQSLIKVLLSRFPQSCRHFQSP-DLGTQYLV 1992


>AK126972-1|BAC86771.1|  521|Homo sapiens PTPRF), interacting
           protein (liprin), alpha 2  protein.
          Length = 521

 Score = 31.5 bits (68), Expect = 7.1
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 148 MDPILDVFIH-AVNAILMLVLLMFSRHPVRCLHFHHPLLLGVVYLI 192
           +DP LD F+   V+    L+ ++ SR P  C HF  P  LG  YL+
Sbjct: 408 IDPQLDCFLSMTVSWYQSLIKVLLSRFPQSCRHFQSP-DLGTQYLV 452


>AB007936-1|BAA32312.2| 2687|Homo sapiens KIAA0467 protein protein.
          Length = 2687

 Score = 31.5 bits (68), Expect = 7.1
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 148  MDPILDVFIH-AVNAILMLVLLMFSRHPVRCLHFHHPLLLGVVYLI 192
            +DP LD F+   V+    L+ ++ SR P  C HF  P  LG  YL+
Sbjct: 2574 IDPQLDCFLSMTVSWYQSLIKVLLSRFPQSCRHFQSP-DLGTQYLV 2618


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.327    0.139    0.446 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,191,200
Number of Sequences: 224733
Number of extensions: 3175240
Number of successful extensions: 18981
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 18957
Number of HSP's gapped (non-prelim): 33
length of query: 499
length of database: 73,234,838
effective HSP length: 93
effective length of query: 406
effective length of database: 52,334,669
effective search space: 21247875614
effective search space used: 21247875614
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 67 (31.1 bits)