GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003552-TA|BGIBMGA003552-PA|undefined
         (499 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   4.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   4.4  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   5.9  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   7.7  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   7.7  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   7.7  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   7.7  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   7.7  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 260 TLLFLTSLSTVISSMTFYVMNDKF 283
           T++F   LS   S+ T YV++D F
Sbjct: 344 TMVFCNDLSIDRSTNTMYVLSDNF 367


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
          receptor 1 protein.
          Length = 953

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 5  KKYFKSEFQLSNFNLNH 21
          KKYF+      NFNLN+
Sbjct: 46 KKYFEQTLNELNFNLNY 62


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 13/28 (46%), Positives = 15/28 (53%)

Query: 396 QPLTFSVVYVTFGIIYYFAGGVEQEGNP 423
           Q LT  V++ T  IIY  AG    E NP
Sbjct: 5   QILTLGVLFNTLHIIYSVAGLKIFEANP 32


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)

Query: 274 MTFYVMNDKFGYW 286
           MTF  +ND  GYW
Sbjct: 79  MTFAGVNDLLGYW 91


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)

Query: 164 MLVLLMFSRHPVRC 177
           +LVLL F  HP RC
Sbjct: 8   LLVLLTFLLHPSRC 21


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)

Query: 164 MLVLLMFSRHPVRC 177
           +LVLL F  HP RC
Sbjct: 8   LLVLLTFLLHPSRC 21


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 412 YFAGGVEQEGNPWIYPVVNWA 432
           Y    V  +GNP I P  NW+
Sbjct: 90  YVTREVSIDGNPLIAPYPNWS 110


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 181 HHPLLLGVVYLIFSIVYYYAGGTNPVKVTQTIVK-MSAFMKYIKQETHV 228
           ++P L   +Y++   +YY++   NP+      +K  +AF + I  +T +
Sbjct: 301 YYPDLNEWLYILSGCLYYFSTTINPILYNLMSIKYRNAFKQTICCKTRI 349


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.327    0.139    0.446 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,138
Number of Sequences: 429
Number of extensions: 5500
Number of successful extensions: 20
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 9
length of query: 499
length of database: 140,377
effective HSP length: 61
effective length of query: 438
effective length of database: 114,208
effective search space: 50023104
effective search space used: 50023104
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 46 (22.6 bits)