GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003550-TA|BGIBMGA003550-PA|undefined
         (56 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    20   2.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    19   4.8  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 20.2 bits (40), Expect = 2.1
 Identities = 6/10 (60%), Positives = 8/10 (80%)

Query: 2   LVIIRWKFRG 11
           ++II W FRG
Sbjct: 315 VIIINWNFRG 324


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 19.0 bits (37), Expect = 4.8
 Identities = 8/17 (47%), Positives = 8/17 (47%)

Query: 7   WKFRGLNFAALSKWVSD 23
           W  R      LS WVSD
Sbjct: 926 WSCRCKFLQELSSWVSD 942


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.328    0.140    0.479 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,242
Number of Sequences: 429
Number of extensions: 210
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 56
length of database: 140,377
effective HSP length: 36
effective length of query: 20
effective length of database: 124,933
effective search space:  2498660
effective search space used:  2498660
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.4 bits)
S2: 35 (18.2 bits)