GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003549-TA|BGIBMGA003549-PA|IPR012086|Protein chain
release factor, RF-1/RF-2, IPR000352|Class I peptide chain release
factor, IPR005139|PCRF
         (371 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    27   0.26 
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    27   0.26 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   7.3  

>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 27.1 bits (57), Expect = 0.26
 Identities = 13/38 (34%), Positives = 22/38 (57%)

Query: 243 IHTPTGTTVECQEGRSQIKNKQIAMQKLRTLLLEKQIQ 280
           I+T T  T E Q GRS++ ++Q+ M       L +Q++
Sbjct: 16  IYTVTAETEEGQSGRSRVSDEQLNMALSDQRYLRRQLK 53


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 27.1 bits (57), Expect = 0.26
 Identities = 13/38 (34%), Positives = 22/38 (57%)

Query: 243 IHTPTGTTVECQEGRSQIKNKQIAMQKLRTLLLEKQIQ 280
           I+T T  T E Q GRS++ ++Q+ M       L +Q++
Sbjct: 16  IYTVTAETEEGQSGRSRVSDEQLNMALSDQRYLRRQLK 53


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 4.2
 Identities = 13/56 (23%), Positives = 26/56 (46%)

Query: 252  ECQEGRSQIKNKQIAMQKLRTLLLEKQIQEQALKLQSERKSQVGSGNRNEKIRTYN 307
            E Q   + ++ +Q   Q+ +    ++Q Q+Q  + Q+  +  VG+G       T N
Sbjct: 1200 EQQRNAAMVQQQQQQQQQQQQQQQQQQQQQQQQQHQAREREGVGAGIAETSAGTSN 1255


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 7.3
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 178 VHRVQRIPATEKGGRIHTSTVTVAILPQPSEIE 210
           V    ++ ++   GR+H S  T++ L    E+E
Sbjct: 393 VELANKMESSGMAGRVHISNATLSFLNGEFEVE 425


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.131    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,810
Number of Sequences: 429
Number of extensions: 3301
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 4
length of query: 371
length of database: 140,377
effective HSP length: 59
effective length of query: 312
effective length of database: 115,066
effective search space: 35900592
effective search space used: 35900592
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 44 (21.8 bits)