GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003548-TA|BGIBMGA003548-PA|undefined
         (57 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    19   3.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    19   6.3  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        19   6.3  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        19   6.3  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    19   6.3  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        19   6.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    18   8.3  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 19.4 bits (38), Expect = 3.6
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 4/39 (10%)

Query: 2   SGAVADVGCPVAWDGDVVWSDYAEKANVVTSSTRIDYSY 40
           S AV +    V+  G+VVW  +     +  SS  ID  +
Sbjct: 103 SSAVINTNVIVSHTGEVVWLSH----GIFRSSCDIDVEF 137


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 18.6 bits (36), Expect = 6.3
 Identities = 8/38 (21%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 6   ADVGCPVAWDGDVVWSDYAEKANVVTSSTRIDYSYREN 43
           AD  C + W GD   +  + +++  ++  +  Y  + N
Sbjct: 85  ADFCCGMRWPGDA--TGLSNRSSTSSNDPKNQYKNQNN 120


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 18.6 bits (36), Expect = 6.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 37  DYSYRENALTLSSNMY 52
           +YS REN L   S+++
Sbjct: 177 EYSARENELRALSSLF 192


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 18.6 bits (36), Expect = 6.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 37  DYSYRENALTLSSNMY 52
           +YS REN L   S+++
Sbjct: 177 EYSARENELRALSSLF 192


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 18.6 bits (36), Expect = 6.3
 Identities = 11/57 (19%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 1   MSGAVADVGCPVAWDGDVVWSDYAEKANVVTSSTRIDYSYRENALTLSSNMYGSVHV 57
           +S  + + GC +    D  W++Y + + +V S+ +I     +    L S +  ++ +
Sbjct: 97  ISEKIGNGGCLLQPYPDWSWANYKDCSGIV-SAYKIAIDKFDRLWVLDSGLINNIQL 152


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 18.6 bits (36), Expect = 6.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 37  DYSYRENALTLSSNMY 52
           +YS REN L   S+++
Sbjct: 177 EYSARENELRALSSLF 192


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 18.2 bits (35), Expect = 8.3
 Identities = 8/22 (36%), Positives = 11/22 (50%)

Query: 17  DVVWSDYAEKANVVTSSTRIDY 38
           + V SDY  +  V+ S    DY
Sbjct: 973 ETVCSDYFSQGGVIESIMVSDY 994


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.126    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,193
Number of Sequences: 429
Number of extensions: 375
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 57
length of database: 140,377
effective HSP length: 37
effective length of query: 20
effective length of database: 124,504
effective search space:  2490080
effective search space used:  2490080
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.8 bits)
S2: 35 (18.2 bits)