GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003547-TA|BGIBMGA003547-PA|IPR001766|Fork head
transcription factor
         (250 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.16 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   2.0  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          23   2.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   4.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.1  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 12/41 (29%), Positives = 21/41 (51%)

Query: 170  DVTPITMLPRERPRRAFTIDALLEPDSPRLSPSPPQPMISL 210
            D +P T L  +    A++   +  P   +L PS PQP +++
Sbjct: 1256 DSSPATALMLQHAPPAYSCGTVSVPQQQQLPPSSPQPRLTV 1296


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 22  TAMAIWSSPERMLPLSEIYRFITDRFPYYRRNTQRW 57
           +A+ +WS+  R      IY+ I D +  Y+ N  ++
Sbjct: 403 SALQMWSTSLRDPVFFSIYKTILDYYHKYKENLPKY 438


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 22 TAMAIWSSPERMLPLSEIYRFITDRFPYYRRNTQRW 57
          +A+ +WS+  R      IY+ I D +  Y+ N  ++
Sbjct: 29 SALQMWSTSLRDPVFFSIYKTILDYYHKYKENLPKY 64


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 31  ERMLPLSEIYRFITDRFPYYRRNTQRW 57
           +R+L +SEI   I D  P  +   Q W
Sbjct: 570 DRVLVISEIQMVIVDVIPTDKNPVQLW 596


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/18 (55%), Positives = 10/18 (55%)

Query: 199 LSPSPPQPMISLEARMAA 216
           L   PPQP  SLE  M A
Sbjct: 903 LVQEPPQPPNSLETAMVA 920


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/18 (55%), Positives = 10/18 (55%)

Query: 199 LSPSPPQPMISLEARMAA 216
           L   PPQP  SLE  M A
Sbjct: 899 LVQEPPQPPNSLETAMVA 916


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.135    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,876
Number of Sequences: 429
Number of extensions: 4186
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 6
length of query: 250
length of database: 140,377
effective HSP length: 56
effective length of query: 194
effective length of database: 116,353
effective search space: 22572482
effective search space used: 22572482
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)