GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003545-TA|BGIBMGA003545-PA|IPR001680|WD-40 repeat,
IPR011046|WD40-like
         (341 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    25   0.72 
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              23   2.9  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   6.7  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   6.7  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 25.4 bits (53), Expect = 0.72
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 182 ISDISIIDRGNNIVSVSRDGSAKLW--DVGKSNCLDNIVEGHGQINCCTITTTTDEV 236
           ++DI+ ID   NI+ V  D   +LW  D G  + L N    H Q     I   TD++
Sbjct: 100 MNDINKIDSIINIIRVRVDACDRLWGVDTGVDDILGNNTVIH-QPRIIIIDLKTDKI 155



 Score = 24.2 bits (50), Expect = 1.7
 Identities = 11/40 (27%), Positives = 19/40 (47%)

Query: 150 IVVLSAGADGSCRIWSAETGINPVLLKGHTMSISDISIID 189
           I ++    D   R+W  +TG++ +L     +    I IID
Sbjct: 110 INIIRVRVDACDRLWGVDTGVDDILGNNTVIHQPRIIIID 149


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 29  ISSKVLNELSTQETLTRSGNKSDGNIKINISKNYE 63
           I   VL++  T + +      SD N+ I ISK ++
Sbjct: 87  IVQAVLDDNETDQLIVECSPISDANVHIKISKIFQ 121


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 10 ITIQSDWNSILRL--PNGQVWISSKVLNELSTQETLTRSGNKSDGNIKINISK 60
          I IQ   N++ R    +GQ  +SS   + L   +TL  S ++  G+I  + SK
Sbjct: 19 IAIQPGSNALSRNVEASGQRSVSSGFRSSLRNYKTLISSHDELPGHINCDSSK 71


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 9/11 (81%), Positives = 11/11 (100%)

Query: 148 SGIVVLSAGAD 158
           +GIVV+SAGAD
Sbjct: 318 AGIVVISAGAD 328


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.133    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,845
Number of Sequences: 429
Number of extensions: 3805
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 5
length of query: 341
length of database: 140,377
effective HSP length: 58
effective length of query: 283
effective length of database: 115,495
effective search space: 32685085
effective search space used: 32685085
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)