GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003544-TA|BGIBMGA003544-PA|IPR003197|Cytochrome bd
ubiquinol oxidase, 14 kDa subunit, IPR001005|Myb, DNA-binding
         (100 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    20   6.6  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    20   6.6  

>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
          protein.
          Length = 128

 Score = 19.8 bits (39), Expect = 6.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)

Query: 29 TPDVTEALRRLPSHVVDE 46
          TPD  E  R LP  + +E
Sbjct: 57 TPDAAELKRNLPDALENE 74


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
          protein.
          Length = 128

 Score = 19.8 bits (39), Expect = 6.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)

Query: 29 TPDVTEALRRLPSHVVDE 46
          TPD  E  R LP  + +E
Sbjct: 57 TPDAAELKRNLPDALENE 74


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.133    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,940
Number of Sequences: 429
Number of extensions: 1048
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 100
length of database: 140,377
effective HSP length: 49
effective length of query: 51
effective length of database: 119,356
effective search space:  6087156
effective search space used:  6087156
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)
S2: 38 (19.4 bits)