Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA003543-TA|BGIBMGA003543-PA|IPR001611|Leucine-rich
repeat, IPR003591|Leucine-rich repeat, typical subtype
(378 letters)
Database: bee
429 sequences; 140,377 total letters
Searching.....................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 56 4e-10
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 22 7.5
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 22 9.9
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 56.4 bits (130), Expect = 4e-10
Identities = 35/118 (29%), Positives = 62/118 (52%)
Query: 70 FSGLEKLIYLNLSNNRLRYIPSDLFWDTPQLEHLDLSSNVFESLKNEPFIMHTKLQILNL 129
F GL +LI LNLS N L +I + +F D L+ LDL +N + +++ F+ L L L
Sbjct: 331 FLGLIRLIVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDRIESNAFLPLYNLHTLEL 390
Query: 130 NNCRIRSLPDRLFTRLPNLKKLDISENYVVILSENVLKPLNKLERLEMWSGYWQCSPD 187
++ ++R++ +LF L L +L +S N + + + + L+ L++ PD
Sbjct: 391 SDNKLRTVGAQLFNGLFVLNRLTLSGNAIASIDPLAFRNCSDLKELDLSGNELTSVPD 448
Score = 50.4 bits (115), Expect = 2e-08
Identities = 39/130 (30%), Positives = 63/130 (48%), Gaps = 1/130 (0%)
Query: 48 GYTALKLLDISYNLIFWIGLHAFSGLEKLIYLNLSNNRLRYIPSDLFWDTPQLEHLDLSS 107
G L +L++SYN++ I F L L L+L NN + I S+ F L L+LS
Sbjct: 333 GLIRLIVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDRIESNAFLPLYNLHTLELSD 392
Query: 108 NVFESLKNEPFIMHTKLQILNLNNCRIRSLPDRLFTRLPNLKKLDISENYVVILSENVLK 167
N ++ + F L L L+ I S+ F +LK+LD+S N + + + L+
Sbjct: 393 NKLRTVGAQLFNGLFVLNRLTLSGNAIASIDPLAFRNCSDLKELDLSGNELTSVPD-ALR 451
Query: 168 PLNKLERLEM 177
L L+ L++
Sbjct: 452 DLALLKTLDL 461
Score = 49.6 bits (113), Expect = 4e-08
Identities = 29/107 (27%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Query: 52 LKLLDISYNLIFWIGLHAFSGLEKLIYLNLSNNRLRYIPSDLFWDTPQLEHLDLSSNVFE 111
LK LD+ N I +F L++L L L N + + + WD P L+ L+L+ N +
Sbjct: 456 LKTLDLGENRISNFYNGSFRNLDQLTGLRLIGNDIGNLSRGMLWDLPNLQILNLARNKVQ 515
Query: 112 SLKNEPFIMHTKLQILNLNNCRIRSLPDRLFTRLPNLKKLDISENYV 158
++ F + +L+ + L+ + + + +FT + +L L++SEN++
Sbjct: 516 HVERYAFERNMRLEAIRLDGNFLSDI-NGVFTSIASLLLLNLSENHI 561
Score = 49.2 bits (112), Expect = 6e-08
Identities = 53/202 (26%), Positives = 91/202 (45%), Gaps = 8/202 (3%)
Query: 26 VQVYSLKHNVISELDNFCFKESGYTALKLLDISYNLIFWIGLHAFSGLEKLIYLNLSNNR 85
++ ++ +N + L F + L+ + ++YN + + F+ LE+L+ LNL+ NR
Sbjct: 263 LRTFNASYNSLDSLPEGLFAST--RDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAGNR 320
Query: 86 L--RYIPSDLFWDTPQLEHLDLSSNVFESLKNEPFIMHTKLQILNLNNCRIRSLPDRLFT 143
L + F +L L+LS N+ + F LQIL+L N I + F
Sbjct: 321 LGSDRVDETTFLGLIRLIVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDRIESNAFL 380
Query: 144 RLPNLKKLDISENYVVILSENVLKPLNKLERLEMWSGYWQCSPDFIAIETWIKSKGINYQ 203
L NL L++S+N + + + L L RL + SG S D +A K ++
Sbjct: 381 PLYNLHTLELSDNKLRTVGAQLFNGLFVLNRLTL-SGNAIASIDPLAFRNCSDLKELDLS 439
Query: 204 -NQCTKGPK--RSEKIISTVSL 222
N+ T P R ++ T+ L
Sbjct: 440 GNELTSVPDALRDLALLKTLDL 461
Score = 48.8 bits (111), Expect = 8e-08
Identities = 40/132 (30%), Positives = 63/132 (47%), Gaps = 3/132 (2%)
Query: 25 AVQVYSLKHNVISELDNFCFKESGYTALKLLDISYNLIFWIGLHAFSGLEKLIYLNLSNN 84
A +VY L NV+ EL N F G +++L ++ + I I F+GL L L+L +N
Sbjct: 796 ATEVY-LDGNVLRELQNHVF--IGRKNMRVLYVNGSGIESIQNRTFNGLNNLQILHLEDN 852
Query: 85 RLRYIPSDLFWDTPQLEHLDLSSNVFESLKNEPFIMHTKLQILNLNNCRIRSLPDRLFTR 144
R+R + F L L L +N+ + N F+ L+IL L+ R+ + P T
Sbjct: 853 RIRELKGFEFERLSHLRELYLQNNLIGFIGNLTFLPLRSLEILRLSGNRLVTFPVWQVTL 912
Query: 145 LPNLKKLDISEN 156
L +L + N
Sbjct: 913 NARLVELSLGSN 924
Score = 48.4 bits (110), Expect = 1e-07
Identities = 37/154 (24%), Positives = 76/154 (49%), Gaps = 7/154 (4%)
Query: 26 VQVYSLKHNVISELDNFCFKESGYTALKLLDISYNLIFWIGLHAFSGLEKLIYLNLSNNR 85
+Q+ +L N + ++ + F+ + L+ + + N + I F+ + L+ LNLS N
Sbjct: 504 LQILNLARNKVQHVERYAFERN--MRLEAIRLDGNFLSDIN-GVFTSIASLLLLNLSENH 560
Query: 86 LRYIPSDLFWDTPQLEHLDLSSNVFESLKNEPFIMHTKLQILNLNNCRIRSLPDRLFTRL 145
+ + D + L+ LD+ N ESL N I +K++ L+ ++ RI L +
Sbjct: 561 IEWF--DYAFIPGNLKWLDIHGNFIESLGNYYKIRDSKVKTLDASHNRITELSP--LSVP 616
Query: 146 PNLKKLDISENYVVILSENVLKPLNKLERLEMWS 179
+++ L I+ NY+ ++ N L R++M++
Sbjct: 617 DSVELLFINNNYINLVRPNTFTDKVNLTRVDMYA 650
Score = 48.0 bits (109), Expect = 1e-07
Identities = 30/97 (30%), Positives = 48/97 (49%)
Query: 81 LSNNRLRYIPSDLFWDTPQLEHLDLSSNVFESLKNEPFIMHTKLQILNLNNCRIRSLPDR 140
L N LR + + +F + L ++ + ES++N F LQIL+L + RIR L
Sbjct: 801 LDGNVLRELQNHVFIGRKNMRVLYVNGSGIESIQNRTFNGLNNLQILHLEDNRIRELKGF 860
Query: 141 LFTRLPNLKKLDISENYVVILSENVLKPLNKLERLEM 177
F RL +L++L + N + + PL LE L +
Sbjct: 861 EFERLSHLRELYLQNNLIGFIGNLTFLPLRSLEILRL 897
Score = 43.6 bits (98), Expect = 3e-06
Identities = 39/131 (29%), Positives = 57/131 (43%), Gaps = 1/131 (0%)
Query: 47 SGYTALKLLDISYNLIFWIGLHAFSGLEKLIYLNLSNNRLRYIPSDLFWDTPQLEHLDLS 106
+G L L +S N I I AF L L+LS N L +P D D L+ LDL
Sbjct: 404 NGLFVLNRLTLSGNAIASIDPLAFRNCSDLKELDLSGNELTSVP-DALRDLALLKTLDLG 462
Query: 107 SNVFESLKNEPFIMHTKLQILNLNNCRIRSLPDRLFTRLPNLKKLDISENYVVILSENVL 166
N + N F +L L L I +L + LPNL+ L+++ N V +
Sbjct: 463 ENRISNFYNGSFRNLDQLTGLRLIGNDIGNLSRGMLWDLPNLQILNLARNKVQHVERYAF 522
Query: 167 KPLNKLERLEM 177
+ +LE + +
Sbjct: 523 ERNMRLEAIRL 533
Score = 37.5 bits (83), Expect = 2e-04
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
Query: 52 LKLLDISYNLIFWIGLHA-FSGLEKLIYLNLSNNRLRYIPSDLFWDTPQLEHLDLSSNVF 110
+++LD+S N I + ++ L +L L+L N + I D L + S N
Sbjct: 214 IRILDLSRNEITRLQENSPLLDLRQLQELHLQRNAIVEIAGDALTGLTVLRTFNASYNSL 273
Query: 111 ESLKNEPFIMHTKLQILNLNNCRIRSLPDRLFTRLPNLKKLDISEN 156
+SL F L+ ++L +R LP +FTRL L L+++ N
Sbjct: 274 DSLPEGLFASTRDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAGN 319
Score = 37.1 bits (82), Expect = 2e-04
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 3/129 (2%)
Query: 30 SLKHNVISELDNFCFKESGYTALKLLDISYNLIFWIGLHAFSGLEKLIYLNLSNNRLRYI 89
+L N I+ +D F+ + LK LD+S N + + A L L L+L NR+
Sbjct: 413 TLSGNAIASIDPLAFRNC--SDLKELDLSGNELTSVP-DALRDLALLKTLDLGENRISNF 469
Query: 90 PSDLFWDTPQLEHLDLSSNVFESLKNEPFIMHTKLQILNLNNCRIRSLPDRLFTRLPNLK 149
+ F + QL L L N +L LQILNL +++ + F R L+
Sbjct: 470 YNGSFRNLDQLTGLRLIGNDIGNLSRGMLWDLPNLQILNLARNKVQHVERYAFERNMRLE 529
Query: 150 KLDISENYV 158
+ + N++
Sbjct: 530 AIRLDGNFL 538
Score = 33.9 bits (74), Expect = 0.002
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 79 LNLSNNRL-RYIPSDLFWDTPQLEHLDLSSNVFESLKNEPFIMHTKLQILNLNNCRIRSL 137
L+LS N + R + D QL+ L L N + + T L+ N + + SL
Sbjct: 217 LDLSRNEITRLQENSPLLDLRQLQELHLQRNAIVEIAGDALTGLTVLRTFNASYNSLDSL 276
Query: 138 PDRLFTRLPNLKKLDISENYVVILSENVLKPLNKL 172
P+ LF +L+++ ++ N + L + + L +L
Sbjct: 277 PEGLFASTRDLREIHLAYNGLRDLPKGIFTRLEQL 311
Score = 26.6 bits (56), Expect = 0.35
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 122 TKLQILNLNNCRIRSLPDRLFTRLPNLKKLDI 153
T L L+++ C++ +P+ F L LKKL +
Sbjct: 92 TSLHELHVHGCKVLRIPEGAFQPLLELKKLTV 123
Score = 25.4 bits (53), Expect = 0.81
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 110 FESLKNEPFIMHTKLQILNLNNCRIRSLPDRLFTRLPNLKKLDISEN 156
F L + F+ +L L + +++LP L NL+ L+++EN
Sbjct: 135 FLELAPDSFLGLRELHTLEIVESNVQALPVNSLCSLDNLQTLNLTEN 181
Score = 25.4 bits (53), Expect = 0.81
Identities = 38/148 (25%), Positives = 59/148 (39%), Gaps = 18/148 (12%)
Query: 48 GYTALKLLDISYNLIFWIGLHAFSGLEKLIYLNLSNNRLRYI--------PSDLFWD--- 96
G L L+I + + + +++ L+ L LNL+ NRLR I SD D
Sbjct: 145 GLRELHTLEIVESNVQALPVNSLCSLDNLQTLNLTENRLRDINDIGLNRRDSDDGSDGND 204
Query: 97 ------TPQLEHLDLSSNVFESL-KNEPFIMHTKLQILNLNNCRIRSLPDRLFTRLPNLK 149
+ LDLS N L +N P + +LQ L+L I + T L L+
Sbjct: 205 GDESSCRADIRILDLSRNEITRLQENSPLLDLRQLQELHLQRNAIVEIAGDALTGLTVLR 264
Query: 150 KLDISENYVVILSENVLKPLNKLERLEM 177
+ S N + L E + L + +
Sbjct: 265 TFNASYNSLDSLPEGLFASTRDLREIHL 292
Score = 22.6 bits (46), Expect = 5.7
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 84 NRLRYIPSDLFWDTPQLEHLDLSSNVFESLKNEPFIMHTKLQILNLNNCRIRSLPD 139
+R + D F +L L++ + ++L LQ LNL R+R + D
Sbjct: 133 SRFLELAPDSFLGLRELHTLEIVESNVQALPVNSLCSLDNLQTLNLTENRLRDIND 188
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 22.2 bits (45), Expect = 7.5
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 78 YLNLSNNRLRYIPSDLFWDTPQLEHLDLSSNVFESLKNEPFI-MHTK 123
Y N+ + R+IP D+ LS +V +LK FI H K
Sbjct: 416 YKNIREDDARHIPHASVTDSENTVPRYLSPDVISALKGVRFIAQHIK 462
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 21.8 bits (44), Expect = 9.9
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 346 SNTTDGARHADAIRVPNRSETP 367
S+TTD RH+ + + ++ TP
Sbjct: 234 SHTTDENRHSSTLDIDHKMLTP 255
Database: bee
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 140,377
Number of sequences in database: 429
Lambda K H
0.320 0.137 0.415
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,970
Number of Sequences: 429
Number of extensions: 5074
Number of successful extensions: 29
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 17
length of query: 378
length of database: 140,377
effective HSP length: 59
effective length of query: 319
effective length of database: 115,066
effective search space: 36706054
effective search space used: 36706054
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)
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