GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003539-TA|BGIBMGA003539-PA|IPR014021|Helicase
superfamily 1 and 2 ATP-binding, IPR001650|Helicase, C-terminal,
IPR011545|DEAD/DEAH box helicase, N-terminal, IPR012961|DSH,
C-terminal, IPR014001|DEAD-like helicases, N-terminal
         (1030 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    27   1.0  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       25   4.2  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 26.6 bits (56), Expect = 1.0
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 22  QLPNVKNVEKPN---LEELTAAGNKRAHDDIQYADTSVSKKPREEEEDSE 68
           Q P  + ++ P+   +E  T   +K A      A TSV   PR E+++ E
Sbjct: 567 QCPRFRKLDSPSDSGIESGTEKPDKPASSSASSAPTSVCSSPRSEDKEVE 616


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 125 PFQKEAILCIDNLQSVLVSAHTSAGKTVVAEYAIAL 160
           P QK A+  I N + ++  A T +GKT  A +A+ +
Sbjct: 221 PVQKHALPIIMNGRDLMACAQTGSGKT--AAFAVPI 254


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.135    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 275,950
Number of Sequences: 429
Number of extensions: 11915
Number of successful extensions: 33
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 3
length of query: 1030
length of database: 140,377
effective HSP length: 65
effective length of query: 965
effective length of database: 112,492
effective search space: 108554780
effective search space used: 108554780
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)