GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003536-TA|BGIBMGA003536-PA|IPR009581|Protein of unknown
function DUF1193
         (328 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   6.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   8.4  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 211 DFLIQNGDRHHYEV-YKNRIVILDNGKGLGNP 241
           D ++ N    +YEV YK+ ++I  NG  L  P
Sbjct: 112 DIVLFNNADGNYEVRYKSNVLIYPNGDVLWVP 143


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 186 TDFCKKLSHT-LSLQRILNLIDVAIFDFLIQNGDRHHYEVYKNRIVILDNGKGL 238
           + F   +S T L  +    + D+ +FD L    +R +Y  + N     D G  L
Sbjct: 97  SSFFSSVSPTSLGSENYTGISDLFVFDDLNDYINRLNYSAFVNLTAYYDGGANL 150


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.139    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,184
Number of Sequences: 429
Number of extensions: 4317
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 2
length of query: 328
length of database: 140,377
effective HSP length: 58
effective length of query: 270
effective length of database: 115,495
effective search space: 31183650
effective search space used: 31183650
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 44 (21.8 bits)