GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003535-TA|BGIBMGA003535-PA|IPR001925|Porin, eukaryotic
type
         (377 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    25   1.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   1.4  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   9.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   9.9  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   9.9  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 4/35 (11%)

Query: 15  LKFGIFEHIYAKSNPCSEAN--SPRKVSQSPPIDK 47
           LK GI  H+Y  + PC +A   SP + ++S  +DK
Sbjct: 357 LKQGIQFHLYINTAPCGDARIFSPHEENES--VDK 389


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.6 bits (51), Expect = 1.4
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 75  GKTGAGVTGSRTGHASEKDSDNLPSGA-VSPGLLRHIHNA 113
           G    G+T  RT +AS    D+LP G   S   LR IH A
Sbjct: 254 GDALTGLTVLRTFNASYNSLDSLPEGLFASTRDLREIHLA 293


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 9.9
 Identities = 11/41 (26%), Positives = 18/41 (43%)

Query: 337 GATLQRALGGKKAQLACAISALLNHPNDKFRLGFGVTAAII 377
           G TL+  + G+  + A      L HP       +G+T + I
Sbjct: 364 GGTLENTINGRADEEAAPAPQHLIHPGKDINKLYGMTPSDI 404


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 9.9
 Identities = 11/41 (26%), Positives = 18/41 (43%)

Query: 337 GATLQRALGGKKAQLACAISALLNHPNDKFRLGFGVTAAII 377
           G TL+  + G+  + A      L HP       +G+T + I
Sbjct: 364 GGTLENTINGRADEEAAPAPQHLIHPGKDINKLYGMTPSDI 404


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 9.9
 Identities = 11/41 (26%), Positives = 18/41 (43%)

Query: 337 GATLQRALGGKKAQLACAISALLNHPNDKFRLGFGVTAAII 377
           G TL+  + G+  + A      L HP       +G+T + I
Sbjct: 302 GGTLENTINGRADEEAAPAPQHLIHPGKDINKLYGMTPSDI 342


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.130    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,860
Number of Sequences: 429
Number of extensions: 4368
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 5
length of query: 377
length of database: 140,377
effective HSP length: 59
effective length of query: 318
effective length of database: 115,066
effective search space: 36590988
effective search space used: 36590988
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)