GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003530-TA|BGIBMGA003530-PA|IPR001888|Transposase, type 1
         (295 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    27   0.26 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    27   0.26 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    27   0.26 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   0.61 
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          24   1.8  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          23   2.4  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   3.2  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    22   7.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.9  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 26.6 bits (56), Expect = 0.26
 Identities = 9/26 (34%), Positives = 19/26 (73%)

Query: 1   MLTVLFDYRGVVHSEFLPEGQMLLTI 26
           +L+V +DY+G+V+ E LP  + + ++
Sbjct: 189 LLSVWWDYKGIVYFELLPPNRTINSV 214


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 26.6 bits (56), Expect = 0.26
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 5/75 (6%)

Query: 197  GLRFYDPFDSF--SINSFPNFPLYRPLTNVLGQNVPLIPNNGPSEAPATEASIQSTEKSV 254
            GLR Y  +     + N   + PL  PL     ++VP IP   P +      + QS + S 
Sbjct: 1076 GLRPYTKYTLVVQAYNQVGSGPLSEPLLTQTMEDVPSIP---PEDVRCAALTSQSLQVSW 1132

Query: 255  QTPPPEPSDLNVLNY 269
            Q PP   S+  +  Y
Sbjct: 1133 QPPPNTHSNGIIQGY 1147


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 26.6 bits (56), Expect = 0.26
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 5/75 (6%)

Query: 197  GLRFYDPFDSF--SINSFPNFPLYRPLTNVLGQNVPLIPNNGPSEAPATEASIQSTEKSV 254
            GLR Y  +     + N   + PL  PL     ++VP IP   P +      + QS + S 
Sbjct: 1072 GLRPYTKYTLVVQAYNQVGSGPLSEPLLTQTMEDVPSIP---PEDVRCAALTSQSLQVSW 1128

Query: 255  QTPPPEPSDLNVLNY 269
            Q PP   S+  +  Y
Sbjct: 1129 QPPPNTHSNGIIQGY 1143


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 25.4 bits (53), Expect = 0.61
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 97  RDPQPSEATPTVAPESVSEQAPSSTETPPALSPETSSPAPSEDDKTAA 144
           R    +EA P V  +    Q      +PPA SP + + A S+  +TA+
Sbjct: 651 RQKDSAEAEPAVIVQHTQSQLHLHLTSPPARSPSSQAQA-SQCPQTAS 697



 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 105 TPTVAPESVSEQAPSSTETPPALSPETSS 133
           +P  +P  +S  A SST T P  +  T++
Sbjct: 822 SPASSPRYLSAAATSSTSTSPRPASSTAA 850


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/26 (30%), Positives = 18/26 (69%)

Query: 1  MLTVLFDYRGVVHSEFLPEGQMLLTI 26
          +L V +D++G+V+ E LP  + + ++
Sbjct: 68 LLLVWWDHKGIVYFELLPPNRTINSV 93


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/26 (30%), Positives = 18/26 (69%)

Query: 1  MLTVLFDYRGVVHSEFLPEGQMLLTI 26
          +L+V +DY+G+V+ E L   + + ++
Sbjct: 67 LLSVWWDYKGIVYFELLSPNRTINSV 92


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 35  PAPGRFPKVYNALITSNQNLEPSKA 59
           P P R  K   +LITS++  +P KA
Sbjct: 491 PPPYRLNKPLMSLITSSEVRQPGKA 515


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 12/46 (26%), Positives = 18/46 (39%)

Query: 77  DALFYGDFPANNGFVPPVETRDPQPSEATPTVAPESVSEQAPSSTE 122
           D  +  +F  +NG       +  Q    TP V+  S S  AP   +
Sbjct: 39  DGNYINNFETSNGISHQESGQPKQVDNETPVVSQGSDSYTAPDGQQ 84


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/24 (33%), Positives = 14/24 (58%)

Query: 101 PSEATPTVAPESVSEQAPSSTETP 124
           P +  P ++P+S S  +  S E+P
Sbjct: 436 PHDDQPPLSPQSDSSSSSRSAESP 459


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.134    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,462
Number of Sequences: 429
Number of extensions: 5473
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 10
length of query: 295
length of database: 140,377
effective HSP length: 57
effective length of query: 238
effective length of database: 115,924
effective search space: 27589912
effective search space used: 27589912
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 43 (21.4 bits)