GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003526-TA|BGIBMGA003526-PA|IPR000859|CUB
         (539 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   2.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   6.4  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 2.1
 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 372 GQRTFTTHSGEISSKNVSVTGSLNEFFYQQCTW--VLDSNVERQLFIDITSEQDKSCGSW 429
           G +T T+ S E ++  +++   L + + +      V+  ++ R L ID+  +Q KS   W
Sbjct: 325 GGKTLTSISVESNTMFINILKFLKQKYVKNSKLEKVIKHDILRMLIIDLRKKQLKSLEDW 384


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 10/39 (25%), Positives = 15/39 (38%)

Query: 201 AFHDEQHEGTASPDATCASTHYGLAAPAHGGVSAPSHHH 239
           ++H  QH  +       +S H+       G    P HHH
Sbjct: 315 SYHPHQHHPSQYHPHRGSSPHHQHGNHTMGPTMGPPHHH 353


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.134    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,569
Number of Sequences: 429
Number of extensions: 6903
Number of successful extensions: 36
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 2
length of query: 539
length of database: 140,377
effective HSP length: 61
effective length of query: 478
effective length of database: 114,208
effective search space: 54591424
effective search space used: 54591424
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 46 (22.6 bits)