GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003522-TA|BGIBMGA003522-PA|IPR002130|Peptidyl-prolyl
cis-trans isomerase, cyclophilin type
         (190 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   1.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   5.7  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   5.7  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    21   5.7  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   7.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   10.0 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   10.0 
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    21   10.0 

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
          acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 16 IYSAAALRFASTQPD-KQVYFDVTADGEPLGRIVIKLNTD 54
          IYS A L+     PD K++Y D+ ++   L R V+  NT+
Sbjct: 19 IYSVAGLKIFEANPDTKRLYDDLLSNYNRLIRPVMN-NTE 57


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)

Query: 98  NGTGGKSIYGRTFSD-ENFKLKH 119
           NG+G +SI  RTF+   N ++ H
Sbjct: 826 NGSGIESIQNRTFNGLNNLQILH 848



 Score = 20.6 bits (41), Expect = 10.0
 Identities = 12/44 (27%), Positives = 18/44 (40%)

Query: 1    MIPVSMLRRTLVNGTIYSAAALRFASTQPDKQVYFDVTADGEPL 44
            +I ++ + R  V    YS   LRF   +P K       A   P+
Sbjct: 1011 IIVLAFVFRESVGAWAYSKYGLRFLRAKPGKSSGAAAMASAAPM 1054


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 103 KSIYGRTFSDENFKL 117
           K IYG  F+D NF++
Sbjct: 385 KVIYGFDFNDVNFRI 399


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding
          protein ASP6 protein.
          Length = 146

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 50 KLNTDEVPKTAENFRALCT 68
          K+  +E  KT +N R +C+
Sbjct: 26 KMTIEEAKKTIKNLRKVCS 44


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 12/29 (41%), Positives = 14/29 (48%)

Query: 96  NHNGTGGKSIYGRTFSDENFKLKHTGPGI 124
           NH+     S +GR   DE   L  T PGI
Sbjct: 352 NHDNHRVASRFGRQRGDEIVMLTLTLPGI 380


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/32 (25%), Positives = 13/32 (40%)

Query: 118 KHTGPGILSMANAGPNTNGSQFFITTVPTPWL 149
           +H G  + +  NA    + S      VP  W+
Sbjct: 651 RHAGEYVCTAENAAGTASHSTTLTVNVPPRWI 682


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 11/41 (26%), Positives = 18/41 (43%)

Query: 45  GRIVIKLNTDEVPKTAENFRALCTGEKGFGYKGSSFHRIIP 85
           G   +K+N+ +VP   E + +    E   G K    + I P
Sbjct: 146 GENAVKVNSVQVPTDDEPYASFKAMEDSVGGKCEVLYDIAP 186


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding
          protein ASP5 protein.
          Length = 143

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 48 VIKLNTDEVPKTAENFRALC 67
          V  ++ D+V K A+N R  C
Sbjct: 21 VKSMSADQVEKLAKNMRKSC 40


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.137    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,979
Number of Sequences: 429
Number of extensions: 3042
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 190
length of database: 140,377
effective HSP length: 54
effective length of query: 136
effective length of database: 117,211
effective search space: 15940696
effective search space used: 15940696
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 41 (20.6 bits)