GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003519-TA|BGIBMGA003519-PA|IPR007327|Tumor protein D52
         (326 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   0.68 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      25   0.68 
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              25   1.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   1.2  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    23   3.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.6  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 25.4 bits (53), Expect = 0.68
 Identities = 11/21 (52%), Positives = 16/21 (76%)

Query: 159 AEWSRELARVEDEIATLRTVL 179
           +E  R+L R+ED++ATLR  L
Sbjct: 559 SEKFRKLIRIEDDVATLRMKL 579


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 25.4 bits (53), Expect = 0.68
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 7/74 (9%)

Query: 163 RELARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQSIE 222
           R+ + +E+E  T      +K +    ++RK G T ++EI     + + NV+E Q  QS+ 
Sbjct: 218 RKSSTIENESETESNASSTKTK----MRRKSGAT-FEEIQNQ--RVMANVRERQRTQSLN 270

Query: 223 NRVAALTNAVTETP 236
              AAL   +   P
Sbjct: 271 EAFAALRKIIPTLP 284


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 180 QSKIRQSSDL-KRKLGITVWKEITEDVNQGLKNVKESQVYQSIE 222
           Q+ IR    +   K GI   K+I  DVN G  N+++  V   IE
Sbjct: 23  QNAIRMGQSICMAKTGIN--KQIINDVNDGKINIEDENVQLYIE 64


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 159 AEWSRELARVEDEIATLRTVL 179
           +E  R+L R+ED +ATLR  L
Sbjct: 612 SEKFRKLIRIEDNVATLRMKL 632


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 148 GLTPEQADQLRAEWSRELARVEDEIATLRTVLQSKIRQSSDLKRKLGI 195
           G TPE+     A    +LAR++ E A  R + +   R+   L R LG+
Sbjct: 15  GGTPEEKRPRTAFSGEQLARLKREFAENRYLTE---RRRQQLSRDLGL 59


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 253 SSIIGGITAGVSSKLGQMRNSESFRSIEERVGSAYE 288
           +S IGGIT  +SS + Q + + +  S E R  S ++
Sbjct: 476 ASSIGGITRDISSLVVQEQPTPTTESEERRFFSFHQ 511


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.310    0.126    0.350 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,689
Number of Sequences: 429
Number of extensions: 2762
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 6
length of query: 326
length of database: 140,377
effective HSP length: 58
effective length of query: 268
effective length of database: 115,495
effective search space: 30952660
effective search space used: 30952660
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 44 (21.8 bits)