GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003518-TA|BGIBMGA003518-PA|IPR001564|Nucleoside
diphosphate kinase, IPR006602|Region of unknown function DM10
         (413 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    24   2.7  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    24   2.7  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   3.6  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   4.8  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   4.8  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 392 CTDLPEDGELEVEYF 406
           CT+ PEDG L + Y+
Sbjct: 122 CTERPEDGALILHYY 136


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 392 CTDLPEDGELEVEYF 406
           CT+ PEDG L + Y+
Sbjct: 122 CTERPEDGALILHYY 136


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 201 AVTKWRQCLGATDPTEAAPGTLRNLYG-ENKLKNVA 235
           A+  W+QC G  D   A  GT   + G   KLK ++
Sbjct: 196 AIEIWKQCEGKIDYLVAGAGTGGTISGIGRKLKELS 231


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 65  FDNSVQIIDAKKGKNVLKRVQL--PPLNLDMLQIGN 98
           F N  QI+D K   NV K++ +     N D+  I N
Sbjct: 508 FSNEEQIVDLKAFNNVPKKLNMFYNNFNSDIKSISN 543


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 65  FDNSVQIIDAKKGKNVLKRVQL--PPLNLDMLQIGN 98
           F N  QI+D K   NV K++ +     N D+  I N
Sbjct: 508 FSNEEQIVDLKAFNNVPKKLNMFYNNFNSDIKSISN 543


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.139    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,804
Number of Sequences: 429
Number of extensions: 4687
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 5
length of query: 413
length of database: 140,377
effective HSP length: 59
effective length of query: 354
effective length of database: 115,066
effective search space: 40733364
effective search space used: 40733364
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)