GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003516-TA|BGIBMGA003516-PA|IPR001837|CAP protein,
IPR013912|Adenylate cyclase-associated,  C-terminal,
IPR006599|Adenylate cyclase-associated protein, CARP
         (89 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   2.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   2.3  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    20   4.1  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    20   4.1  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    20   4.1  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    20   4.1  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    20   5.4  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    19   7.1  
AY569719-1|AAS86672.1|  401|Apis mellifera complementary sex det...    19   9.4  
AY569718-1|AAS86671.1|  401|Apis mellifera complementary sex det...    19   9.4  
AY569715-1|AAS86668.1|  401|Apis mellifera complementary sex det...    19   9.4  
AY569714-1|AAS86667.1|  401|Apis mellifera complementary sex det...    19   9.4  
AY569713-1|AAS86666.1|  401|Apis mellifera complementary sex det...    19   9.4  
AY569711-1|AAS86664.1|  401|Apis mellifera complementary sex det...    19   9.4  
AY569702-1|AAS86655.1|  400|Apis mellifera complementary sex det...    19   9.4  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    19   9.4  
AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    19   9.4  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    19   9.4  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    19   9.4  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 2.3
 Identities = 5/16 (31%), Positives = 12/16 (75%)

Query: 20  TVSIDKTDGCQIYLSP 35
           T+S+D+   C++++ P
Sbjct: 380 TMSVDRMQHCELHMQP 395


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 2.3
 Identities = 5/16 (31%), Positives = 12/16 (75%)

Query: 20  TVSIDKTDGCQIYLSP 35
           T+S+D+   C++++ P
Sbjct: 380 TMSVDRMQHCELHMQP 395


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 20.2 bits (40), Expect = 4.1
 Identities = 6/20 (30%), Positives = 16/20 (80%)

Query: 27  DGCQIYLSPESLDVEIVSSK 46
           DG QI+++P +  V++++++
Sbjct: 126 DGVQIFIAPNNGAVKVLANE 145


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 20.2 bits (40), Expect = 4.1
 Identities = 6/20 (30%), Positives = 16/20 (80%)

Query: 27  DGCQIYLSPESLDVEIVSSK 46
           DG QI+++P +  V++++++
Sbjct: 164 DGVQIFIAPNNGAVKVLANE 183


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 20.2 bits (40), Expect = 4.1
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 32  YLSPESLDVEIVSSKSSEMNVLIPKANGDYTEH--AIPEQFKTVLNK 76
           Y +PE  D  + S  ++E++   P +  DY       P+ F++V ++
Sbjct: 369 YSTPEYDDTYMDSGYTNEIDFSFPDSVSDYPLELKGSPDGFESVTSQ 415


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 20.2 bits (40), Expect = 4.1
 Identities = 8/24 (33%), Positives = 15/24 (62%)

Query: 3   LFVSSEKSLALVLGKVPTVSIDKT 26
           +F++    ++L +G+V TVS   T
Sbjct: 409 IFIAQMNGISLGIGEVITVSFTAT 432


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 19.8 bits (39), Expect = 5.4
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 14  VLGKVPTVSIDKTDGCQIYLSPESLDVEIVSSKSSEMNVLIPKAN-GDYTEHAIPE 68
           +LGK+ T+     + C+ YL  +S  V+  S    ++     KA+ G + +  I +
Sbjct: 559 LLGKLSTIEDADKNQCRHYLDAKS-SVQNYSLAKHQLKEAFVKAHLGSWVKKPIEQ 613


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 19.4 bits (38), Expect = 7.1
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 5/70 (7%)

Query: 22  SIDKTDGCQIYLSPESLDVEIVSSKSSEMNVLIPKANGDY----TEHAIPEQFKTVLNKP 77
           +ID+T+   +Y++ E  +  I+   S +    +     DY    T+  +  +  TV N  
Sbjct: 198 AIDRTN-TMVYIADEKGEGLIMYQNSDDSFHRLTSNTFDYDPRYTKLTVAGESFTVKNGI 256

Query: 78  AGLTTTPVEN 87
            G+  +PV N
Sbjct: 257 YGIALSPVTN 266


>AY569719-1|AAS86672.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 19.0 bits (37), Expect = 9.4
 Identities = 5/30 (16%), Positives = 15/30 (50%)

Query: 23  IDKTDGCQIYLSPESLDVEIVSSKSSEMNV 52
           ++ +DG  ++  PE   V     +  ++++
Sbjct: 103 LESSDGTSLFRGPEGTQVSATELRKIKVDI 132


>AY569718-1|AAS86671.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 19.0 bits (37), Expect = 9.4
 Identities = 5/30 (16%), Positives = 15/30 (50%)

Query: 23  IDKTDGCQIYLSPESLDVEIVSSKSSEMNV 52
           ++ +DG  ++  PE   V     +  ++++
Sbjct: 103 LESSDGTSLFRGPEGTQVSATELRKIKVDI 132


>AY569715-1|AAS86668.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 19.0 bits (37), Expect = 9.4
 Identities = 5/30 (16%), Positives = 15/30 (50%)

Query: 23  IDKTDGCQIYLSPESLDVEIVSSKSSEMNV 52
           ++ +DG  ++  PE   V     +  ++++
Sbjct: 103 LESSDGTSLFRGPEGTQVSATELRKIKVDI 132


>AY569714-1|AAS86667.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 19.0 bits (37), Expect = 9.4
 Identities = 5/30 (16%), Positives = 15/30 (50%)

Query: 23  IDKTDGCQIYLSPESLDVEIVSSKSSEMNV 52
           ++ +DG  ++  PE   V     +  ++++
Sbjct: 103 LESSDGTSLFRGPEGTQVSATELRKIKVDI 132


>AY569713-1|AAS86666.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 19.0 bits (37), Expect = 9.4
 Identities = 5/30 (16%), Positives = 15/30 (50%)

Query: 23  IDKTDGCQIYLSPESLDVEIVSSKSSEMNV 52
           ++ +DG  ++  PE   V     +  ++++
Sbjct: 103 LESSDGTSLFRGPEGTQVSATELRKIKVDI 132


>AY569711-1|AAS86664.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 19.0 bits (37), Expect = 9.4
 Identities = 5/30 (16%), Positives = 15/30 (50%)

Query: 23  IDKTDGCQIYLSPESLDVEIVSSKSSEMNV 52
           ++ +DG  ++  PE   V     +  ++++
Sbjct: 103 LESSDGTSLFRGPEGTQVSATELRKIKVDI 132


>AY569702-1|AAS86655.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 19.0 bits (37), Expect = 9.4
 Identities = 5/30 (16%), Positives = 15/30 (50%)

Query: 23  IDKTDGCQIYLSPESLDVEIVSSKSSEMNV 52
           ++ +DG  ++  PE   V     +  ++++
Sbjct: 103 LESSDGTSLFRGPEGTQVSATELRKIKVDI 132


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 19.0 bits (37), Expect = 9.4
 Identities = 5/30 (16%), Positives = 15/30 (50%)

Query: 23  IDKTDGCQIYLSPESLDVEIVSSKSSEMNV 52
           ++ +DG  ++  PE   V     +  ++++
Sbjct: 103 LESSDGTSLFRGPEGTQVSATELRKIKVDI 132


>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 19.0 bits (37), Expect = 9.4
 Identities = 9/43 (20%), Positives = 22/43 (51%)

Query: 23  IDKTDGCQIYLSPESLDVEIVSSKSSEMNVLIPKANGDYTEHA 65
           I+   G ++Y+ P    +E+V + +++   L+     +  E+A
Sbjct: 77  IEMLKGTELYVEPVYKMIEVVHAGNADDIQLVKGIANECIENA 119


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 19.0 bits (37), Expect = 9.4
 Identities = 9/43 (20%), Positives = 22/43 (51%)

Query: 23  IDKTDGCQIYLSPESLDVEIVSSKSSEMNVLIPKANGDYTEHA 65
           I+   G ++Y+ P    +E+V + +++   L+     +  E+A
Sbjct: 77  IEMLKGTELYVEPVYKMIEVVHAGNADDIQLVKGIANECIENA 119


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 19.0 bits (37), Expect = 9.4
 Identities = 6/16 (37%), Positives = 10/16 (62%)

Query: 60  DYTEHAIPEQFKTVLN 75
           D    + PEQFK +++
Sbjct: 326 DANSSSTPEQFKVIID 341


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.309    0.128    0.349 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,511
Number of Sequences: 429
Number of extensions: 792
Number of successful extensions: 19
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of query: 89
length of database: 140,377
effective HSP length: 48
effective length of query: 41
effective length of database: 119,785
effective search space:  4911185
effective search space used:  4911185
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.5 bits)
S2: 37 (19.0 bits)