GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003511-TA|BGIBMGA003511-PA|IPR001611|Leucine-rich repeat
         (205 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      31   0.006
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    29   0.031
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              22   3.6  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   6.3  

>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 31.5 bits (68), Expect = 0.006
 Identities = 27/110 (24%), Positives = 43/110 (39%), Gaps = 7/110 (6%)

Query: 8   VHTLSTYNKQINAILFMLVLYCATTCSKGMTEIEALGAKPNHCTYEYAYDMYGAHCADLR 67
           V T+     +  A++   +LY A T               N   Y YA  +   H  D +
Sbjct: 94  VFTMMNKEMRHQAVVLFRLLYSAKTFDVFYNTAVWARFNVNEQMYLYALSVAVIHRPDTK 153

Query: 68  LSKIPSLRSGIEILDFSDNKLQEL-------TGDTLSSYTSIKFLYLADN 110
           L K+P +   +  L F+D  +Q+        T D   +Y +I +  LA N
Sbjct: 154 LMKLPPMYEVMPHLYFNDEVMQKAYNIAMGDTADMKKTYNNIDYYLLAAN 203


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 29.1 bits (62), Expect = 0.031
 Identities = 13/40 (32%), Positives = 23/40 (57%)

Query: 76  SGIEILDFSDNKLQELTGDTLSSYTSIKFLYLADNQIYLI 115
           + ++IL   DN+++EL G      + ++ LYL +N I  I
Sbjct: 842 NNLQILHLEDNRIRELKGFEFERLSHLRELYLQNNLIGFI 881



 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/35 (22%), Positives = 19/35 (54%)

Query: 78  IEILDFSDNKLQELTGDTLSSYTSIKFLYLADNQI 112
           ++ILD  +N +  +  +      ++  L L+DN++
Sbjct: 361 LQILDLRNNSIDRIESNAFLPLYNLHTLELSDNKL 395


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/43 (23%), Positives = 21/43 (48%)

Query: 2   TIFFKLVHTLSTYNKQINAILFMLVLYCATTCSKGMTEIEALG 44
           ++F   +     Y+K+++ +   L + C T   +GM  +E  G
Sbjct: 140 SLFVPYITNFIIYSKRMDVLEATLRVLCMTDGKEGMHTLERQG 182


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/21 (33%), Positives = 14/21 (66%)

Query: 2   TIFFKLVHTLSTYNKQINAIL 22
           T+FF  VH  +T++  +N ++
Sbjct: 133 TLFFIYVHPSATFSLDLNKVV 153


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.132    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,422
Number of Sequences: 429
Number of extensions: 1298
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 5
length of query: 205
length of database: 140,377
effective HSP length: 55
effective length of query: 150
effective length of database: 116,782
effective search space: 17517300
effective search space used: 17517300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)