GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003508-TA|BGIBMGA003508-PA|undefined
         (143 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   2.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   5.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   5.1  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      20   8.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                20   8.9  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase
          protein.
          Length = 615

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 9/30 (30%), Positives = 16/30 (53%)

Query: 14 GSECRKIYKPIDKNANIDFINMEAGGARPV 43
          G  C++++     + + DFI +  G AR V
Sbjct: 53 GEPCQRVHSSRIPDLSYDFIVVGGGAARAV 82


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query: 33 INMEAGGARPVGKPTDK 49
          +N  AGG +  GKP ++
Sbjct: 68 VNFVAGGIQQAGKPKEE 84


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 112  PGSVQQLVTFYNSQGKGSVIKPYSYSDAVKQ 142
            PG ++ L+T +  QG+   IK    S+  +Q
Sbjct: 1030 PGQIKSLLTGHGLQGQTIFIKQSPSSNQSQQ 1060


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 20.2 bits (40), Expect = 8.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)

Query: 95  PVPVYPTPAT 104
           P PV PTP T
Sbjct: 157 PTPVTPTPTT 166


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.2 bits (40), Expect = 8.9
 Identities = 8/19 (42%), Positives = 10/19 (52%)

Query: 97  PVYPTPATRLITTPGPGSV 115
           P Y T      +TPG GS+
Sbjct: 223 PSYTTATMATTSTPGSGSL 241


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.138    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,010
Number of Sequences: 429
Number of extensions: 1981
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 143
length of database: 140,377
effective HSP length: 52
effective length of query: 91
effective length of database: 118,069
effective search space: 10744279
effective search space used: 10744279
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)
S2: 40 (20.2 bits)