GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003507-TA|BGIBMGA003507-PA|IPR001208|MCM,
IPR008380|HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase,
IPR008994|Nucleic acid-binding, OB-fold, IPR003593|AAA ATPase
         (1500 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    27   1.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      25   3.5  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               25   4.6  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          25   4.6  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    25   6.1  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 4/72 (5%)

Query: 663 NKNYNPILNTDFLL-HESGGIPNTPKRDNLPTN--TNIETNGKNNYNSQFPQLGSTHKSQ 719
           ++N N +LN D  L H +  I      D +  +   N +    N+YN    Q   + KS 
Sbjct: 381 DRNQN-VLNNDLNLEHVNFQILGANVNDLIRNSRCANFDNQDNNHYNHNHNQARHSSKSD 439

Query: 720 HTNTNQQSLQSN 731
           + N NQ + Q++
Sbjct: 440 NQNNNQHNDQAH 451


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 1/92 (1%)

Query: 684 NTPKRDNLPTNTNIETNGKNNYNSQFPQLGSTHKSQHTNTNQQSLQSNGKRDYVSPQFTT 743
           N+P  DN+     +E  G N+ N+      S+      +    +  S+ + +  S   +T
Sbjct: 233 NSPLEDNIKCEP-LELTGGNSGNAAGNNEDSSDSGAAASDRPPASASSNEHEAESEHTST 291

Query: 744 PKPSSGQTLIPQSTRNPNHNPSSSTRGITPLS 775
           P   S   + P +  + N + ++     TPLS
Sbjct: 292 PNFLSEAKIFPPTPGSFNFSMAALATEHTPLS 323


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)

Query: 1226 CHPIMHKIVAQNVEEYIRPNKKLRNYFQMLQESDKKLF 1263
            C    H I+ +N E  ++  K LR+  + +Q+S KKLF
Sbjct: 61   CFMTKHGILDKNAEVDVQ--KALRHLPRSMQDSTKKLF 96


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 11/95 (11%)

Query: 737 VSPQFTTPKPSSGQTLIPQSTRNPNHNPSSSTRGITPLSPTTKVQPNHQTTGKVKDLIHF 796
           V P+F +       +L+P +T +P   PS++T        TT  Q + +     KD++H 
Sbjct: 363 VKPEFGSIYFLGNYSLVPTTTASPTTEPSTTT-------STTISQKHIKVFVVNKDILHE 415

Query: 797 Y---DGKSKDQNAPQPIPSYSSILQGTGNNNFPTS 828
           +   D +  D+N   P P  S +     ++  P S
Sbjct: 416 HNVDDNEDHDENMIIP-PKKSDMSNMQSDDGGPLS 449


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 15/76 (19%), Positives = 27/76 (35%)

Query: 694 NTNIETNGKNNYNSQFPQLGSTHKSQHTNTNQQSLQSNGKRDYVSPQFTTPKPSSGQTLI 753
           N N +    NN N+        + ++  +  Q   + NG R   + Q    +  + Q   
Sbjct: 434 NQNADNQNANNQNADNQNANKQNGNRQNDNRQNDNKQNGNRQNDNKQNGNRQNDNKQNGN 493

Query: 754 PQSTRNPNHNPSSSTR 769
            Q+    N N  +  R
Sbjct: 494 RQNGNKQNDNKQNGNR 509


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.133    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 446,499
Number of Sequences: 429
Number of extensions: 21303
Number of successful extensions: 66
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 62
Number of HSP's gapped (non-prelim): 7
length of query: 1500
length of database: 140,377
effective HSP length: 67
effective length of query: 1433
effective length of database: 111,634
effective search space: 159971522
effective search space used: 159971522
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 50 (24.2 bits)