GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003505-TA|BGIBMGA003505-PA|IPR001478|PDZ/DHR/GLGF
         (884 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              26   1.2  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    25   3.6  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 12/39 (30%), Positives = 22/39 (56%)

Query: 582 NGRRLRDLTMSEAKEALKSGTSEIDIVICRQRDKSSTEQ 620
           + RR RD T++E+ +A  S +  + + I    D+SS  +
Sbjct: 30  HSRRHRDFTVAESYDASSSNSDSLSMTIPPSIDRSSIHE 68


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 14  AVSPDAENRSTHISPVRYPNRKSSGSSVETNFYNLNDQIIIV--EKSPHRCNHGSE 67
           ++SP  ENRS  +      N  SS SS E+        +     EKS H C  G E
Sbjct: 734 SLSPRVENRSAIVHSEASANANSSTSSEESREEKATTSLEAEKREKSEH-CEKGKE 788


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.130    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 248,928
Number of Sequences: 429
Number of extensions: 10946
Number of successful extensions: 19
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 2
length of query: 884
length of database: 140,377
effective HSP length: 64
effective length of query: 820
effective length of database: 112,921
effective search space: 92595220
effective search space used: 92595220
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 48 (23.4 bits)