GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003501-TA|BGIBMGA003501-PA|undefined
         (191 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   4.3  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   4.3  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   5.7  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    21   5.7  

>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/34 (29%), Positives = 19/34 (55%)

Query: 48  ETITNDYEILSSAVSESKYIFAARVLSVKKIKRG 81
           +++   +E L  AV      F  + +SVK+++RG
Sbjct: 233 KSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRG 266


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/34 (29%), Positives = 19/34 (55%)

Query: 48  ETITNDYEILSSAVSESKYIFAARVLSVKKIKRG 81
           +++   +E L  AV      F  + +SVK+++RG
Sbjct: 290 KSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRG 323


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/34 (26%), Positives = 20/34 (58%)

Query: 48  ETITNDYEILSSAVSESKYIFAARVLSVKKIKRG 81
           +++   +E L+ A+      F  + +SVK+++RG
Sbjct: 290 KSVEMHHEALTEALPGDNVGFNVKNISVKELRRG 323


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
          1-alpha protein.
          Length = 119

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/34 (26%), Positives = 20/34 (58%)

Query: 48 ETITNDYEILSSAVSESKYIFAARVLSVKKIKRG 81
          +++   +E L+ A+      F  + +SVK+++RG
Sbjct: 1  KSVEMHHEALTEALPGDNVGFNVKNISVKELRRG 34


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.136    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,153
Number of Sequences: 429
Number of extensions: 1584
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 191
length of database: 140,377
effective HSP length: 54
effective length of query: 137
effective length of database: 117,211
effective search space: 16057907
effective search space used: 16057907
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 42 (21.0 bits)