GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003500-TA|BGIBMGA003500-PA|undefined
         (224 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.0  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   4.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   9.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.3  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 17/60 (28%), Positives = 22/60 (36%)

Query: 33  VHRRHRAVLPPCNFNETIIADEWSLMEAIGKSKYIFTGKVLNVRKMKSVDENKGKRSNLY 92
           VH + +A L     N  +   E       G+   +F G     R       NK  RSNLY
Sbjct: 202 VHPKDKATLADQIKNGIVSPQEERPKGINGRRASLFCGLQKYTRSFAHQSINKEARSNLY 261


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 17/60 (28%), Positives = 22/60 (36%)

Query: 33  VHRRHRAVLPPCNFNETIIADEWSLMEAIGKSKYIFTGKVLNVRKMKSVDENKGKRSNLY 92
           VH + +A L     N  +   E       G+   +F G     R       NK  RSNLY
Sbjct: 197 VHPKDKATLADQIKNGIVSPQEERPKGINGRRASLFCGLQKYTRSFAHQSINKEARSNLY 256


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)

Query: 131  PRAQELCAPSPRPRLS 146
            P+ Q+L   SP+PRL+
Sbjct: 1280 PQQQQLPPSSPQPRLT 1295


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/26 (26%), Positives = 14/26 (53%)

Query: 122 SGSIVIAERPRAQELCAPSPRPRLSA 147
           + S  +   P  +   +PSP PR+++
Sbjct: 494 AASTAVIHEPVVETNSSPSPNPRIAS 519


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 1/18 (5%)

Query: 169  IVTDPVPLTLYHLDRINA 186
            +V D VP T YHL R+ A
Sbjct: 1520 VVLDLVPATWYHL-RVTA 1536


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.325    0.143    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,073
Number of Sequences: 429
Number of extensions: 2992
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 5
length of query: 224
length of database: 140,377
effective HSP length: 55
effective length of query: 169
effective length of database: 116,782
effective search space: 19736158
effective search space used: 19736158
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 42 (21.0 bits)