GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003497-TA|BGIBMGA003497-PA|IPR014021|Helicase
superfamily 1 and 2 ATP-binding, IPR001650|Helicase, C-terminal,
IPR002464|ATP-dependent helicase, DEAH-box, IPR000953|Chromo,
IPR011701|Major facilitator superfamily MFS_1, IPR000330|SNF2-related,
IPR014001|DEAD-like helicases, N-terminal
         (2145 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       35   0.006
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    35   0.008
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               27   1.3  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    26   2.9  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    26   3.8  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    26   3.8  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    25   6.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   8.8  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 35.1 bits (77), Expect = 0.006
 Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 3/103 (2%)

Query: 1216 LIFSQMVRMLDILAEYLQRRHFPFQRLDGSIKGELRKQALDHFNAEGSQDFCFLLSTRAG 1275
            L+F +M +  D +A +L   ++P   + G      R++AL  F    S     L++T   
Sbjct: 455  LVFVEMKKKADFIAVFLSENNYPTTSIHGDRLQRQREEALADFK---SGRMSILVATAVA 511

Query: 1276 GLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIY 1318
              G+++     VI +D        +    R  R+G + +   +
Sbjct: 512  ARGLDIKNVSHVINYDLPKGIDEYVHRIGRTGRVGNRGRATSF 554


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 34.7 bits (76), Expect = 0.008
 Identities = 12/18 (66%), Positives = 13/18 (72%)

Query: 794 PQYLIKWKGWSHIHNTWE 811
           P YLIKWK W   +NTWE
Sbjct: 259 PTYLIKWKNWDLKYNTWE 276


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 6/103 (5%)

Query: 1078 KDRQFLRSFSWACLLVDEAHRLKNDDSLLYKALKEFDTNHRLLVTG--TPLQNSLKELWA 1135
            KD +     SWA L   +A  ++ DD  L   LK F T H +L       +Q +L+ L  
Sbjct: 27   KDCRKESKVSWAALKKMKAGDMEQDDQNLKCYLKCFMTKHGILDKNAEVDVQKALRHLPR 86

Query: 1136 LLHFIMPYKFESWEDFEKDHEDAATKGYE--KLHKQLEPFILR 1176
             +       F   +  +  +ED   K Y+  K + +  P +L+
Sbjct: 87   SMQDSTKKLFNKCKSIQ--NEDPCEKAYQLVKCYVEFHPEVLQ 127


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 2/37 (5%)

Query: 556 SHNYDNA-NSSKSDHHTDKNSSDEDSAPKSRSRNSHS 591
           +HN++ A +SSKSD+  + N  ++ +   S+S N H+
Sbjct: 426 NHNHNQARHSSKSDNQ-NNNQHNDQAHHSSKSNNRHN 461


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 855 QSELQQELVKTYNNVERIIAEQNRELE 881
           +  L  EL+ +YN +ER +A ++  LE
Sbjct: 55  EKRLLNELLSSYNTLERPVANESEPLE 81


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 855 QSELQQELVKTYNNVERIIAEQNRELE 881
           +  L  EL+ +YN +ER +A ++  LE
Sbjct: 55  EKRLLNELLSSYNTLERPVANESEPLE 81


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
            determiner protein.
          Length = 418

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 6/59 (10%)

Query: 1686 KNGKQKMKKPRPK-RANKEPVTKD-IVEDDGSSAED----KKTKGVKNDKTEKGKLKIE 1738
            +  K K K P  + R+N    +K  I+ D   S++D    +  KG++ + TE  K+K+E
Sbjct: 81   ERSKTKSKSPESRDRSNTSNTSKTFILSDKLESSDDTSLFRGPKGIQINATELQKIKLE 139


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 27   VDSSASYKRRWWRVSQNVLYGLGHVYNDLCAAMWF 61
            V+     ++ W +VS NV  G   V  DL  A W+
Sbjct: 1496 VEHKKKNQQEWNQVSNNVKPGGNFVVLDLVPATWY 1530


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.133    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 507,435
Number of Sequences: 429
Number of extensions: 19942
Number of successful extensions: 79
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 70
Number of HSP's gapped (non-prelim): 10
length of query: 2145
length of database: 140,377
effective HSP length: 69
effective length of query: 2076
effective length of database: 110,776
effective search space: 229970976
effective search space used: 229970976
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)