GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003493-TA|BGIBMGA003493-PA|IPR001104|3-oxo-5-alpha-
steroid 4-dehydrogenase, C-terminal, IPR000626|Ubiquitin
         (300 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    23   3.3  
AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor p...    23   3.3  

>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 211 RPPGTKIRRIPKPDGNP 227
           RPP  ++RR  KP+  P
Sbjct: 249 RPPHPRLRREAKPEAKP 265



 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query: 205 ILLKNLRPPGTKIRRIPKPDGNP 227
           + +   RPP  ++RR  +P+  P
Sbjct: 103 VYISQPRPPHPRLRREAEPEAEP 125



 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query: 205 ILLKNLRPPGTKIRRIPKPDGNP 227
           + +   RPP  ++RR  +P+  P
Sbjct: 159 VYISQPRPPHPRLRREAEPEAEP 181


>AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor
           protein.
          Length = 199

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 211 RPPGTKIRRIPKPDGNP 227
           RPP  ++RR  KP+  P
Sbjct: 137 RPPHPRLRREAKPEAEP 153


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.140    0.449 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,445
Number of Sequences: 429
Number of extensions: 4390
Number of successful extensions: 25
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 12
length of query: 300
length of database: 140,377
effective HSP length: 57
effective length of query: 243
effective length of database: 115,924
effective search space: 28169532
effective search space used: 28169532
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 44 (21.8 bits)