GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003492-TA|BGIBMGA003492-PA|IPR013101|Leucine-rich repeat
2, IPR001611|Leucine-rich repeat, IPR006553|Leucine-rich repeat,
cysteine-containing subtype
         (534 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    29   0.13 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    29   0.13 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   8.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   8.4  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 28.7 bits (61), Expect = 0.13
 Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 9/124 (7%)

Query: 26  LSGNQYLTDALFNRFISASP----GLEELNLSGCSLQFHLGLVKKFYPNGTDIFQNPSES 81
           ++ N      L N F+S  P     L E  L+  +L+  L  +K+ YP    +F +  E+
Sbjct: 132 IAPNNGAVKVLANEFLSILPIFLYALGEQPLTEQNLE-ELRDLKETYPFNPVLFISSLEN 190

Query: 82  VLTFHFIHQMIISRADKIKRLLFSNTLIDGAALKTLSEIKNL-QLESLEVHACDQLTNTG 140
           +       ++  S   +++  L++N   D  + KT  +  +  ++ SL +   DQLTN G
Sbjct: 191 ISLNGIDPELTESEQHRLQNRLYTN---DSTSSKTDDDSIDFDRMNSLGLSWLDQLTNLG 247

Query: 141 ILSL 144
            L +
Sbjct: 248 FLGM 251


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 28.7 bits (61), Expect = 0.13
 Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 9/124 (7%)

Query: 26  LSGNQYLTDALFNRFISASP----GLEELNLSGCSLQFHLGLVKKFYPNGTDIFQNPSES 81
           ++ N      L N F+S  P     L E  L+  +L+  L  +K+ YP    +F +  E+
Sbjct: 170 IAPNNGAVKVLANEFLSILPIFLYALGEQPLTEQNLE-ELRDLKETYPFNPVLFISSLEN 228

Query: 82  VLTFHFIHQMIISRADKIKRLLFSNTLIDGAALKTLSEIKNL-QLESLEVHACDQLTNTG 140
           +       ++  S   +++  L++N   D  + KT  +  +  ++ SL +   DQLTN G
Sbjct: 229 ISLNGIDPELTESEQHRLQNRLYTN---DSTSSKTDDDSIDFDRMNSLGLSWLDQLTNLG 285

Query: 141 ILSL 144
            L +
Sbjct: 286 FLGM 289


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 8.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 46  GLEELNLSGCSLQFHLGLVKK 66
           G +++ +S CSL    G++KK
Sbjct: 440 GTKDIPISACSLPCEPGMIKK 460


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 8.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 46  GLEELNLSGCSLQFHLGLVKK 66
           G +++ +S CSL    G++KK
Sbjct: 530 GTKDIPISACSLPCEPGMIKK 550


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.137    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,350
Number of Sequences: 429
Number of extensions: 5565
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 4
length of query: 534
length of database: 140,377
effective HSP length: 61
effective length of query: 473
effective length of database: 114,208
effective search space: 54020384
effective search space used: 54020384
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)