GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003490-TA|BGIBMGA003490-PA|IPR008628|Golgi
phosphoprotein 3
         (285 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    24   1.3  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    24   1.3  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.1  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   4.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   9.4  

>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/27 (37%), Positives = 18/27 (66%)

Query: 234 DVLENAFAPLSDEDYELATRRVRALLD 260
           D LEN  +P S++  ++A + V+ L+D
Sbjct: 69  DALENECSPCSEKQKKIADKVVQFLID 95


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/27 (37%), Positives = 18/27 (66%)

Query: 234 DVLENAFAPLSDEDYELATRRVRALLD 260
           D LEN  +P S++  ++A + V+ L+D
Sbjct: 69  DALENECSPCSEKQKKIADKVVQFLID 95


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 133 PETVQSWIEYLSGETWNPMKLKYQLKNVRERLAKNLVEKGVLTTEKQNFLLFDMTTHPLT 192
           P  VQ+ +  L   T++  K+   L+++ E+   N+V+ GV  +E    + +D+   P  
Sbjct: 161 PYDVQTCVLKLGSWTYDGFKV--DLRHMDEKSGSNVVDVGVDLSEFYMSVEWDILEVPAV 218

Query: 193 DN 194
            N
Sbjct: 219 RN 220


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/48 (22%), Positives = 24/48 (50%)

Query: 147 TWNPMKLKYQLKNVRERLAKNLVEKGVLTTEKQNFLLFDMTTHPLTDN 194
           +W     +  LK++++    NLV KG+  ++    + +D+   P + N
Sbjct: 178 SWTYNGAQVDLKHMKQEAGSNLVAKGIDLSDFYLSVEWDILEVPASRN 225


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 12/48 (25%), Positives = 23/48 (47%)

Query: 147 TWNPMKLKYQLKNVRERLAKNLVEKGVLTTEKQNFLLFDMTTHPLTDN 194
           +W     K  L+++ E+   N+V+ GV  +E    + +D+   P   N
Sbjct: 173 SWTYDGFKVDLRHMDEKSGSNVVDVGVDLSEFYMSVEWDILEVPAVRN 220


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 12/48 (25%), Positives = 23/48 (47%)

Query: 147 TWNPMKLKYQLKNVRERLAKNLVEKGVLTTEKQNFLLFDMTTHPLTDN 194
           +W     +  L+++ E   KN+V+ GV  +E    + +D+   P   N
Sbjct: 169 SWTYDGFQVDLRHIDEIRGKNVVDIGVDLSEFYTSVEWDILEVPAVRN 216


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.131    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,842
Number of Sequences: 429
Number of extensions: 1863
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 285
length of database: 140,377
effective HSP length: 57
effective length of query: 228
effective length of database: 115,924
effective search space: 26430672
effective search space used: 26430672
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)